PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00692.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family CAMTA
Protein Properties Length: 1069aa    MW: 119046 Da    PI: 5.1902
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00692.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1172.56.2e-54111262116
                     CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYa 86 
                              ++e ++rwlk+ e++ iL+n+e+++lt++++++p+sgsl+L+nr+++++frkDG++w++kkdg+++ E+he+LKvg+ve+l+cyY+
  Rsa1.0_00692.1_g00004.1  11 YQEaQTRWLKPPEVHFILHNHERYQLTHTPPQNPTSGSLFLFNRRVLKFFRKDGHQWRRKKDGRAIAEAHERLKVGNVEALSCYYV 96 
                              56769********************************************************************************* PP

                     CG-1  87 hseenptfqrrcywlLeeelekivlvhyle 116
                              h+e++p+fqrr+yw+L+ e+++ivlvhy++
  Rsa1.0_00692.1_g00004.1  97 HGEHDPSFQRRIYWMLDPEYDHIVLVHYRD 126
                              ****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143775.5647133IPR005559CG-1 DNA-binding domain
SMARTSM010761.5E-7610128IPR005559CG-1 DNA-binding domain
PfamPF038591.1E-4613126IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.106.9E-8456541IPR013783Immunoglobulin-like fold
CDDcd001021.55E-6457539No hitNo description
SuperFamilySSF812965.13E-17457538IPR014756Immunoglobulin E-set
PfamPF018336.7E-8457537IPR002909IPT domain
Gene3DG3DSA:1.25.40.208.1E-14634728IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.186636728IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.13E-14638731IPR020683Ankyrin repeat-containing domain
CDDcd002041.01E-11656728No hitNo description
PfamPF127962.0E-6662729IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008810.232669701IPR002110Ankyrin repeat
SMARTSM0001514783805IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.638785812IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.95E-6785891IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.97839861IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.407840869IPR000048IQ motif, EF-hand binding site
PfamPF006120.0083842860IPR000048IQ motif, EF-hand binding site
SMARTSM000156.3E-4862884IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.267863887IPR000048IQ motif, EF-hand binding site
PfamPF006127.0E-5865884IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1069 aa     Download sequence    Send to blast
MQSEYEISTL YQEAQTRWLK PPEVHFILHN HERYQLTHTP PQNPTSGSLF LFNRRVLKFF  60
RKDGHQWRRK KDGRAIAEAH ERLKVGNVEA LSCYYVHGEH DPSFQRRIYW MLDPEYDHIV  120
LVHYRDISDG KEGRQTSGTV LQFSQNASAL FSSPSSIGTQ YNHYMGDSTD VLQQHSSTSP  180
GVAEVNSEVV FNSNGVETPE GSGSSYELET RQAIKRLEEQ LSLGDDVVSD VDPLYAQNES  240
LDSLQFLGQP GTVYQRPENN KLERSYGGYV GAQYGVDPLY SQNESLDSLL SLDCTEDINH  300
LAQPATGHQR PENNRLERSY GGYIGADYHP NNLTLVKNDS GGNGGSGDQE SESWKDVLEA  360
CEASIALNSE GSTPSSVKGL LPGMQEDSNW SFTNQADQGA LLLPQELGSF EHPACYPELG  420
APENNAEYSR MMDDEGIIRI PLQEEMRQTV SHKQEFTIQD VSPEWGYANE TTKVIVIGSF  480
LCDPTWSCMF GSVEVPFEII KEGVIRCEAP PCGPGKVNLF ITSGDGLSCS QTREFEYRDK  540
PDTSCSRCNP HELLLLVKFV QTLLSDEPGV GKSKKLKAGD DEEWSHIIDT ILEGSATPTS  600
TVDWLLQKLL KDKLDAWVSS RSQDDYDHTS CSLSKQEQGI IHTVAGLGFD WALHPILGLG  660
VSVDFRDSNG WSALHWSARY GREKMVAALI ASGASAGAVT DPNAQDPAGK TAASIAASNG  720
HKGLAGYLSE VALTNHLSSL TLEETEHSLG SAQVEAEMMV NSISGRSPPG NGDDPHSRAA  780
LRNVAQAAAR IQAAFRAHSF RKRQEREAAM AACYQEYGIY ADIEGIAAMS KLAFGNAKNY  840
NSAALSIQKK YRGYKGRKEF LAKRQKVVKI QAYVRGYQVR KHYKVICWAV GILDKVVLRW  900
RRKGVGLKGF RQDVESREEE SEDEDILKVF RKEKVDGAVN EAFSRVLSMT NSPDARQQYQ  960
RVLKRYCQTK AELGKTETLG TDGGDEDDDD ALLDIADMQY ENLRTEFREH MIFRLVSFLP  1020
DGTMRTLSNL ITYASLLPEV SYFSTEVSPA FLHTDKLHFC TEGLQGFQS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00692.1_g00004.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892000.0AC189200.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB005J17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018471219.10.0PREDICTED: calmodulin-binding transcription activator 4-like
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A0D3ANL70.0A0A0D3ANL7_BRAOL; Uncharacterized protein
STRINGBo2g055720.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64762642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]