PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00703.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 620aa    MW: 64869.5 Da    PI: 7.5762
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00703.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.58.1e-125680327
                             S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                             ++ C +++rtG C yG+rC+F+H++
  Rsa1.0_00703.1_g00004.1 56 EPDCIYYLRTGVCGYGSRCRFNHPR 80
                             689********************96 PP
2zf-CCCH31.43.3e-10104123827
                              GGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   8 ffartGtCkyGdrCkFaHgp 27 
                              +f+rtGtCkyG++Ck++H++
  Rsa1.0_00703.1_g00004.1 104 HFMRTGTCKYGASCKYHHPR 123
                              8*****************96 PP
3zf-CCCH37.83.2e-12146169326
                              S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                              +++C++++rtG+Ck+G +C+F+H+
  Rsa1.0_00703.1_g00004.1 146 EKECSYYMRTGQCKFGLTCRFNHP 169
                              679********************9 PP
4zf-CCCH39.41e-12303328227
                              -S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                              ++++C++f+rtG Ck+G++C+++H+p
  Rsa1.0_00703.1_g00004.1 303 DQPECQYFMRTGDCKFGASCRYHHPP 328
                              689*********************97 PP
5zf-CCCH32.11.9e-10350375227
                              -S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                              + + C +fa+ G+Ck+G+ CkF H++
  Rsa1.0_00703.1_g00004.1 350 GVAQCTHFAQHGICKFGPACKFDHSM 375
                              6788********************85 PP
6zf-CCCH31.82.4e-10515540227
                              -S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                              + + C +f++ G+Ck+G+ CkF H++
  Rsa1.0_00703.1_g00004.1 515 GVAQCTHFSQHGICKFGPACKFDHSM 540
                              6788********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.7E-55380IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.0235381IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-95680IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-65881IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-55980IPR000571Zinc finger, CCCH-type
SMARTSM003560.16100123IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.047103124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-4104123IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-8104123IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.779143171IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-5145170IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.48E-5145172IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-9146169IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-4149168IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-6301328IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.798301329IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-10303328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5304328IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4307326IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4348375IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.554348376IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-8350374IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-5351375IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.432513541IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-4513540IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-8515539IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-5516540IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MERYGRAGEE GPRSDPSIEW ASRGVEGSVW RLGLSGGGAG GGGGGGGEGY PERSNEPDCI  60
YYLRTGVCGY GSRCRFNHPR DRGAVVGGVR GGDGALPERM GQPHFMRTGT CKYGASCKYH  120
HPRQGGVGSL APVSLSYLGY PLRAGEKECS YYMRTGQCKF GLTCRFNHPV PQPQQQQQQQ  180
QTQTIYPTIQ SQPMPSSQQY GLVLTRPPSL LSGSYLPSPY GPPPMVLPPG MVTYPNWNPY  240
QASLTAMPSP GTGTQPSIGS SSVYGGVAPL SPSGTAYTTG TYQSGGPSLT TTSKEQSFPQ  300
RPDQPECQYF MRTGDCKFGA SCRYHHPPLD AVQTNTGVLL SSIGLPLRPG VAQCTHFAQH  360
GICKFGPACK FDHSMASSLS YSPSASSLTD MPVAPYPVGS SSLSGASAPV SSSVETTTAE  420
AVTAVVSSVN SQELAETGGD SAGFSSLYRS LNTLALSFNF FLCFTFYLRG NASLFSQALL  480
KSLLLHVENP LEINNAVQPQ TGVLLSSIGL PLRPGVAQCT HFSQHGICKF GPACKFDHSM  540
ASSLSYSPSA SSLTDMPVAP YPIGSSSLSG ASAPVSSSIE TTTAEAVTAV VSGVNSQELA  600
ETGGDSAGVS GSIEAKTSSI
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00703.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018492152.10.0PREDICTED: zinc finger CCCH domain-containing protein 34-like isoform X2
SwissprotQ9SQU40.0C3H34_ARATH; Zinc finger CCCH domain-containing protein 34
TrEMBLA0A078F4X20.0A0A078F4X2_BRANA; BnaC03g34690D protein
TrEMBLA0A3P6B8K90.0A0A3P6B8K9_BRAOL; Uncharacterized protein
STRINGBra001196.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.11e-148C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]