PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00703.1_g00016.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NF-YA

Protein Properties

Length: 118aa MW: 13499.2 Da PI: 10.5777

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00703.1_g00016.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	89.3	5.4e-28	19	75	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+++NaKQy++Il+RRq+Rakl+++++ +s+kpy+heSRh h ++R Rg+gGrF Rsa1.0_00703.1_g00016.1 19 EEPFFINAKQYHGILRRRQSRAKLAARNRA-MQSKKPYMHESRHLHEINRLRGCGGRF 75 69**************************.9***********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.4E-29	17	78	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	32.49	18	78	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	4.6E-23	20	75	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.1E-20	21	43	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.1E-20	52	75	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 118 aa Download sequence Send to blast
MQLMGIHQQV VPLQCDAVEE PFFINAKQYH GILRRRQSRA KLAARNRAMQ SKKPYMHESR 60 HLHEINRLRG CGGRFFNAKK KNGGRKEEEE ETTSDENTSE ASSSLRSEKS AMAPNGRS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	9e-20	18	82	1	65	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00703.1_g00016.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018434609.1	8e-71	PREDICTED: nuclear transcription factor Y subunit A-4
Refseq	XP_018434610.1	8e-71	PREDICTED: nuclear transcription factor Y subunit A-4
Swissprot	Q8VY64	5e-63	NFYA4_ARATH; Nuclear transcription factor Y subunit A-4
TrEMBL	A0A3P6BXA1	1e-66	A0A3P6BXA1_BRAOL; Uncharacterized protein
STRING	Bo4g039370.1	1e-66	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4168	27	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34720.1	3e-47	nuclear factor Y, subunit A4

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]