PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00707.1_g00026.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 410aa    MW: 45215.3 Da    PI: 9.3209
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00707.1_g00026.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.76.6e-30160214358
                              -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                     WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                              Dgy+W+KYGqK+vkgs+ prsYYrCt+++Cpvkk+vers   ++v ei+Y+geHnh
  Rsa1.0_00707.1_g00026.1 160 DGYKWKKYGQKQVKGSDSPRSYYRCTHPKCPVKKRVERSM-GGQVSEIVYQGEHNH 214
                              9***************************************.*************** PP
2WRKY99.81.7e-31337394259
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              +Dg++WrKYGqK v g+ +prsYYrCts +C ++k+ver+++dp+++++tYeg+Hnh+
  Rsa1.0_00707.1_g00026.1 337 EDGFKWRKYGQKAVGGNAYPRSYYRCTSVNCGARKRVERASDDPRAFITTYEGRHNHH 394
                              8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.8E-26155217IPR003657WRKY domain
SMARTSM007743.4E-29158216IPR003657WRKY domain
SuperFamilySSF1182904.84E-23159217IPR003657WRKY domain
PROSITE profilePS5081122.274160217IPR003657WRKY domain
PfamPF031061.3E-23160214IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-30326395IPR003657WRKY domain
PROSITE profilePS5081129.769331393IPR003657WRKY domain
SuperFamilySSF1182902.22E-26332394IPR003657WRKY domain
SMARTSM007741.9E-36336395IPR003657WRKY domain
PfamPF031061.8E-25337394IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MEVNESERKV IAKPVASRPS CSSVRTFTEL IPDSVTLFPQ SNCHDASIRP DPLRFKQPAA  60
ASVPSPKVEE GNGNGKSCDD SESRSYVVYK PKAQLVSQAT ISLLSNMFKG NCQQDWRQSQ  120
AVEYGKSVRQ GTHREGTNLI PRVPSFTESK TSIGDRSSVD GYKWKKYGQK QVKGSDSPRS  180
YYRCTHPKCP VKKRVERSMG GQVSEIVYQG EHNHFKPSCP PLPPRASSSS PLGFHKPPNG  240
LVCEGSMGKN PSNIYNCQPL WSTQEKMKEG CVLTPFEFAV PRSVSSTGGT SDSGCKSSSQ  300
CDEGELDDPS RSKRRKNEKQ SSEAGVSQSS GESDSLEDGF KWRKYGQKAV GGNAYPRSYY  360
RCTSVNCGAR KRVERASDDP RAFITTYEGR HNHHDLQLSP PSSSTLPTTF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-26160393378Probable WRKY transcription factor 4
2lex_A2e-26160393378Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates trichome development, production of mucilage and tannin in seed coats, and maybe root hair development. {ECO:0000269|PubMed:12084832}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00707.1_g00026.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by salicylic acid or wounding. {ECO:0000269|PubMed:12084832}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018433935.10.0PREDICTED: WRKY transcription factor 44-like isoform X2
SwissprotQ9ZUU00.0WRK44_ARATH; WRKY transcription factor 44
TrEMBLV4M7R80.0V4M7R8_EUTSA; Uncharacterized protein
STRINGXP_006410906.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83622740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.10.0WRKY family protein
Publications ? help Back to Top
  1. Kim K,Jiang K,Teng SL,Feldman LJ,Huang H
    Using biologically interrelated experiments to identify pathway genes in Arabidopsis.
    Bioinformatics, 2012. 28(6): p. 815-22
    [PMID:22271267]
  2. Simon M, et al.
    Tissue-specific profiling reveals transcriptome alterations in Arabidopsis mutants lacking morphological phenotypes.
    Plant Cell, 2013. 25(9): p. 3175-85
    [PMID:24014549]
  3. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]
  4. Verweij W, et al.
    Functionally Similar WRKY Proteins Regulate Vacuolar Acidification in Petunia and Hair Development in Arabidopsis.
    Plant Cell, 2016. 28(3): p. 786-803
    [PMID:26977085]
  5. Gonzalez A, et al.
    TTG2 controls the developmental regulation of seed coat tannins in Arabidopsis by regulating vacuolar transport steps in the proanthocyanidin pathway.
    Dev. Biol., 2016. 419(1): p. 54-63
    [PMID:27046632]
  6. Hassani-Pak K, et al.
    Developing integrated crop knowledge networks to advance candidate gene discovery.
    Appl Transl Genom, 2016. 11: p. 18-26
    [PMID:28018846]