PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00718.1_g00008.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MIKC_MADS
Protein Properties Length: 508aa    MW: 58146.9 Da    PI: 9.7369
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00718.1_g00008.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF961.6e-30959151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fss+gkl+eys+
  Rsa1.0_00718.1_g00008.1  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSSKGKLFEYST 59
                             79***********************************************96 PP
2K-box99.93.7e-3379171597
                    K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 
                              + +  + +++e++  e+akLk+++e L++++R+++GedLesLslkeLq+Le+qL+ ++k+iRs+Kn+ ++e+i+ lqkk k+lq++
  Rsa1.0_00718.1_g00008.1  79 QLVGRDISQSENWVLEHAKLKARVEVLEKNKRNFMGEDLESLSLKELQSLEHQLDAAIKSIRSRKNQAMFESISALQKKDKALQDH 164
                              5566677899**************************************************************************** PP

                    K-box  91 nkaLrkk 97 
                              n++L kk
  Rsa1.0_00718.1_g00008.1 165 NNTLLKK 171
                              ****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.5E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.688161IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.62E-33291IPR002100Transcription factor, MADS-box
CDDcd002653.67E-39279No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-31323IPR002100Transcription factor, MADS-box
PfamPF003193.3E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-313859IPR002100Transcription factor, MADS-box
PfamPF014864.1E-2786171IPR002487Transcription factor, K-box
PROSITE profilePS5129715.42688178IPR002487Transcription factor, K-box
PROSITE profilePS5001114.294248508IPR000719Protein kinase domain
SuperFamilySSF561129.55E-29310455IPR011009Protein kinase-like domain
Gene3DG3DSA:3.30.200.201.4E-11311375No hitNo description
SMARTSM002202.5E-5321488IPR000719Protein kinase domain
PfamPF077141.6E-4323375IPR001245Serine-threonine/tyrosine-protein kinase catalytic domain
PROSITE patternPS001070327354IPR017441Protein kinase, ATP binding site
Gene3DG3DSA:1.10.510.107.4E-17377454No hitNo description
PfamPF000691.8E-12388454IPR000719Protein kinase domain
PROSITE patternPS001080411423IPR008271Serine/threonine-protein kinase, active site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010154Biological Processfruit development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFSS KGKLFEYSTD  60
SCMERILERY DRYLYSDRQL VGRDISQSEN WVLEHAKLKA RVEVLEKNKR NFMGEDLESL  120
SLKELQSLEH QLDAAIKSIR SRKNQAMFES ISALQKKDKA LQDHNNTLLK KREGEENGSS  180
RRTINPMHQQ VFNPSAPILF NLIQMTNAGN CRLLSKDSSK DLWSSFDNPT DKLLSTQSLD  240
VGRNLSSRRT ETGFGKGKFI RLHLTTMMKK VDRWKKKYPL SYGQRSATIS SDTLIKVLKI  300
DFANLMLLDL YKKKKLEEAT RNFMEELGRG AYGIVYKGFL KGAGDSQVTL AVKKVDPVAQ  360
EGEKEFRNEV KAIGKTFLFK RPRPNWKDRR IIAVEISHGI LYLHEECCEQ ILHCDIKPQN  420
ILLDESYSPR ISDLGLAKLL RMKQTNTLTN IRGTKGRLVD LIEDDVEAME DMEMMLEGVA  480
QVHDPPSTSP YSIFSCEEDL SCGPVSRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-20190189MEF2C
5f28_B2e-20190189MEF2C
5f28_C2e-20190189MEF2C
5f28_D2e-20190189MEF2C
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1379383KRPRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00718.1_g00008.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5058410.0AJ505841.1 Brassica oleracea var. botrytis partial mRNA for MADS-box protein FUL-a.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79225110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.11e-103AGAMOUS-like 8