PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00730.1_g00008.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Trihelix
Protein Properties Length: 604aa    MW: 69027.7 Da    PI: 7.1207
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00730.1_g00008.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.22.8e-1594171282
                 trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr..tsessstcpyf 82 
                              W+ +evlaL+++r+ +e+++ +       We  s+k++e gf+rsp++Ckek+e+ ++ry + +  +  +  + +++ ++++f
  Rsa1.0_00730.1_g00008.1  94 WCSDEVLALLRFRSTVENWFPEF-----TWELTSRKLAEVGFKRSPQECKEKFEEEERRYFNSNSANDHHisNYNNKGNYRMF 171
                              ********************998.....9**********************************99999884223344455555 PP
2trihelix98.46e-31447543186
                 trihelix   1 rWtkqevlaLiearr...........emeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 
                              rW+++evlaLi++rr           +                  ++  lWe++skkm e g++rs+k+Ckekwen+nk++kk+k+
  Rsa1.0_00730.1_g00008.1 447 RWPRDEVLALINIRRsistmnddehhK--------DgislsssspKAVRLWERISKKMLESGYKRSAKRCKEKWENINKYFKKTKD 524
                              8**************666554333322........0344444455899************************************** PP

                 trihelix  67 gekkrtsessstcpyfdqle 86 
                               +kkr + +s+tcpyf+ql+
  Rsa1.0_00730.1_g00008.1 525 VNKKR-PLDSRTCPYFHQLT 543
                              ****8.9***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.1E-1092156No hitNo description
PROSITE profilePS500905.48293145IPR017877Myb-like domain
CDDcd122036.85E-24446523No hitNo description
PfamPF138376.0E-20446544No hitNo description
PROSITE profilePS500906.864447516IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MFDGGVPEQI QQFIASPQPP PPPHQPATES SLPFPVSFAS FNSNHQAQHM LSLDSRKIIH  60
HHHHDIKDGG VTSEWIGHTD HDGEDHRHFH HHPWCSDEVL ALLRFRSTVE NWFPEFTWEL  120
TSRKLAEVGF KRSPQECKEK FEEEERRYFN SNSANDHHIS NYNNKGNYRM FSEAEEFYHH  180
GHNDDEHVPS EVGDNQNKSN NSLEGKGNVE ETGQDLLDDK RDHQGQVKES SMGNKVTTVD  240
NVGNHEDDGK SSSSSLNLKM IMRDKKKRKR KKKKERFVVL TGFFEGVVSN MIAQQEEMHK  300
KLLGDMVKKE EEKVAREEAW KKQEMERLNK EVEIRANEQA MASDRNTSII KFISKFTDHD  360
SHDDGNYKVH SPSPSQDLSS LVLPKTQGIT ECQTSSALLP RTLTSDYPIS LQTNDIPLDP  420
ISTKTLKTKT QNIKPPKSDD KSDISKRWPR DEVLALINIR RSISTMNDDE HHKDGISLSS  480
SSPKAVRLWE RISKKMLESG YKRSAKRCKE KWENINKYFK KTKDVNKKRP LDSRTCPYFH  540
QLTALYSQPF TGTTTTATNT STGELETRVG SGDHDDIPAA MHLDANGASK KNSVPFSGFD  600
LAFE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1265270KKRKRK
2265272KKRKRKKK
3265273KKRKRKKKK
4266274KRKRKKKKE
5267271RKRKK
6267273RKRKKKK
7267274RKRKKKKE
8269274RKKKKE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00730.1_g00008.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013677968.10.0trihelix transcription factor GTL2
SwissprotQ8H1810.0GTL2_ARATH; Trihelix transcription factor GTL2
TrEMBLA0A3P6E5R70.0A0A3P6E5R7_BRAOL; Uncharacterized protein
STRINGBo2g152980.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82682838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.10.0Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]