PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00731.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family RAV
Protein Properties Length: 761aa    MW: 86659.9 Da    PI: 6.4803
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00731.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.88.6e-11496543154
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                              ++ykGV ++  +g W A+I++      +kr++lg+f +a eAa  ++ a  kl+
  Rsa1.0_00731.1_g00001.1 496 TKYKGVVQHQ-NGHWGAQIYVD-----HKRIWLGTFKSAAEAAMGYDSASIKLR 543
                              69*****999.8*********3.....4********************999987 PP
2B3491.1e-15620683184
                              EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                              f+k+lt sdv+k++rlv+pkk +                    rsW++k++y+ +s+++v+t+GW  Fvk++ Lke+D+++F+ 
  Rsa1.0_00731.1_g00001.1 620 FQKELTASDVGKLNRLVIPKKEM--------------------RSWTFKYCYWTSSQSFVFTRGWIAFVKEKSLKEKDVITFYT 683
                              77888888888888888888766....................89*************************************93 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF147351.0E-77183406IPR029327HAUS augmin-like complex subunit 4
ProDomPD3607214.0E-90219407No hitNo description
CDDcd000185.63E-21496556No hitNo description
SuperFamilySSF541711.11E-13497556IPR016177DNA-binding domain
PROSITE profilePS5103216.832497554IPR001471AP2/ERF domain
SMARTSM003807.9E-16497560IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-14497554IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.109.8E-6615643IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-18617684IPR015300DNA-binding pseudobarrel domain
CDDcd100176.89E-20619682No hitNo description
SMARTSM010199.1E-9620705IPR003340B3 DNA binding domain
PROSITE profilePS508639.7635705IPR003340B3 DNA binding domain
PfamPF023625.6E-12640683IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-12644690IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0051225Biological Processspindle assembly
GO:0005876Cellular Componentspindle microtubule
GO:0070652Cellular ComponentHAUS complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0051011Molecular Functionmicrotubule minus-end binding
Sequence ? help Back to Top
Protein Sequence    Length: 761 aa     Download sequence    Send to blast
MVKALQGAAQ NLTADVNHLI DQLERHCLAP DGSLVTKSSY YDLQLAREEM SRERLRYLEA  60
MAIYCEAAAM VEEYQQALSV ANHGGTRDVH GLYPQLGLKN SPQVYETLEH RLVVAEAAQK  120
LRLPLISDDG EIHEEEIEKW SMLSRSSLDS ATTSFTISSA SNSVNYANSS ANSVAFGAAD  180
TDGVGGVPNR FLGITPAYLS HVQLQNSMSM DMADYQMFLA REIEGRLKDK CDKLADAIVD  240
DTDSSTGNQN SSARLPERVK FIIEEIEREE AALREDLYSA DRKFAEYYNV LEQILGVLIK  300
LVKDLKLEHQ HKYDEMQKTW LCKRCETMNA KLRVLEHILL LETYTPESIP ALHSIRNYLV  360
EATEEASAAY NKAVTRLREY QGVDPHFDTI ARQYHDIVKL KWTLKRIPDR YISLSHVHFA  420
NNSYDINKSV WEKSRTLFLA MFLVSSVIPM DVSKSETLNT SDSYLPVKKR MRLNEPPTDK  480
ALVSTAIDKV SFSNNTKYKG VVQHQNGHWG AQIYVDHKRI WLGTFKSAAE AAMGYDSASI  540
KLRSFDANSY RNFPWSDLTV HEPVFQKGYT TEAVLNMIKD GSYQREFQDF LKNRSQVVVG  600
SKQNRRGEES NKCFPCTQLF QKELTASDVG KLNRLVIPKK EMRSWTFKYC YWTSSQSFVF  660
TRGWIAFVKE KSLKEKDVIT FYTCDVPTLE GQSKNFLMVD VHRFSDSDSV VTDEEVNKTV  720
HNSSDDVISK PDNFSKSKLG EEETKPEENK GGFMLFGVRI Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A8e-1661968113100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in microtubules reorganization during spindle and phragmoplast development. {ECO:0000269|PubMed:22505726}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00731.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1175160.0AK117516.1 Arabidopsis thaliana At1g50710 mRNA for unknown protein, complete cds, clone: RAFL17-16-B15.
GenBankBT0055090.0BT005509.1 Arabidopsis thaliana clone U50487 unknown protein (At1g50710) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018456885.10.0PREDICTED: AUGMIN subunit 4
SwissprotQ8GYM30.0AUG4_ARATH; AUGMIN subunit 4
TrEMBLA0A078HGW70.0A0A078HGW7_BRANA; BnaC06g03920D protein
TrEMBLA0A0D3CPU30.0A0A0D3CPU3_BRAOL; Uncharacterized protein
TrEMBLA0A3P6GK930.0A0A3P6GK93_BRAOL; Uncharacterized protein
STRINGBo6g022470.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.11e-136RAV family protein
Publications ? help Back to Top
  1. Hotta T, et al.
    Characterization of the Arabidopsis augmin complex uncovers its critical function in the assembly of the acentrosomal spindle and phragmoplast microtubule arrays.
    Plant Cell, 2012. 24(4): p. 1494-509
    [PMID:22505726]