PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00735.1_g00010.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family LBD
Protein Properties Length: 328aa    MW: 37084.3 Da    PI: 6.0766
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00735.1_g00010.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260116.71.4e-36101091100
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                              aCaaCk+++r+Ca+dC+la yfpaeqpk f+nvh+lFG++ ++k+l++l+e ++++am+s+++++ ar r+P++G++g+ ++lq  
  Rsa1.0_00735.1_g00010.1  10 ACAACKYQGRRCATDCPLALYFPAEQPKLFQNVHRLFGVRSIVKILENLDEAQKPEAMKSIIFQSYARDRNPIHGCLGITQQLQYM 95 
                              7************************************************************************************* PP

                   DUF260  87 leqlkaelallkee 100
                              +  +++el++++++
  Rsa1.0_00735.1_g00010.1  96 IWLAEEELKAVNSK 109
                              *********99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.9919110IPR004883Lateral organ boundaries, LOB
PfamPF031953.5E-3310107IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009556Biological Processmicrosporogenesis
GO:0009786Biological Processregulation of asymmetric cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MTLKGGTSVA CAACKYQGRR CATDCPLALY FPAEQPKLFQ NVHRLFGVRS IVKILENLDE  60
AQKPEAMKSI IFQSYARDRN PIHGCLGITQ QLQYMIWLAE EELKAVNSKL QTYLRNNTNT  120
GQYHQYAHKQ MIHEIGEKHE YVTSQLNLGV GLTVNNNQNN STPFFSPLPV FETQQPQMSY  180
TYSSSEINKN GYSPPVHTDS CKDILTTNND NMDASLAWGQ NRFPYHHNNG FNNQNEHCNE  240
MKRNNGVVAI QSPLVNLQMV SNQQDEEGDV EYDEFHQLLE IINDKQSFPD TKVAYASSSG  300
ESLKKHIDDT GESDLRSAAT CFTLTSVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-2261137114LOB family transfactor Ramosa2.1
5ly0_B4e-2261137114LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00735.1_g00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013591366.10.0PREDICTED: LOB domain-containing protein 27-like isoform X2
SwissprotQ9STS61e-124LBD27_ARATH; LOB domain-containing protein 27
TrEMBLA0A3N6PMZ10.0A0A3N6PMZ1_BRACR; Uncharacterized protein
STRINGBo1g072490.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63032746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.11e-117LOB domain-containing protein 27
Publications ? help Back to Top
  1. Kim MJ,Kim M,Kim J
    Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis.
    Plant Signal Behav, 2015. 10(8): p. e1044193
    [PMID:26252070]
  2. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]