PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00737.1_g00013.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ZF-HD
Protein Properties Length: 311aa    MW: 35075.4 Da    PI: 7.5663
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00737.1_g00013.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer103.91e-3283137459
              ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                              ++YkeClkNhAas+Gg+a+DGCgEfmps geeg+++al+C+AC+CHRnFHRre e 
  Rsa1.0_00737.1_g00013.1  83 IKYKECLKNHAASMGGNAIDGCGEFMPS-GEEGSIEALTCSACNCHRNFHRREIEG 137
                              79*************************9.999*********************886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047709.3E-3083135IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-2583138IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.6E-3284135IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.92885134IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466895.32E-19208280IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-29215281IPR009057Homeodomain-like
TIGRFAMsTIGR015652.1E-25219275IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MEVASEEDHV MPIPISTAYD NSYGAHGHMI HHHPANSTAP NPPIVPSNGN GLDKNHDPPP  60
PHLVDYNTML NNNNIKKEKP VVIKYKECLK NHAASMGGNA IDGCGEFMPS GEEGSIEALT  120
CSACNCHRNF HRREIEGQEN TFFSTYYHHH HQPPQPQRKL MFHHSHNKMI KSPLPQQMVM  180
PIGVATAAGS NSESEDHLEE DGQVPPPPAP YSYGRHNQKK RYRTKFSQEQ KEKMLSFAES  240
IGWKMQRQEE AVVQQFCQEI GVRRRVLKVW IHNNKHNLSK KSNNVINNVV ELSSGNNDIN  300
KSPIENLASI P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A4e-232192771775ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00258DAPTransfer from AT2G02540Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00737.1_g00013.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018483487.10.0PREDICTED: zinc-finger homeodomain protein 3-like
RefseqXP_018483488.10.0PREDICTED: zinc-finger homeodomain protein 3-like
SwissprotO647221e-140ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBLV4KST61e-151V4KST6_EUTSA; Uncharacterized protein
STRINGXP_006395776.11e-152(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33392665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.11e-121homeobox protein 21
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]