PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00742.1_g00008.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 417aa    MW: 45897.2 Da    PI: 9.7842
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00742.1_g00008.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.36.2e-06177200123
                              EEETTTTEEESSHHHHHHHHHH.T CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                              + Cp Cg++F+  ++L+ H+ + H
  Rsa1.0_00742.1_g00008.1 177 FACPQCGEVFPKLETLEIHQAVrH 200
                              78******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.868177205IPR007087Zinc finger, C2H2
PROSITE patternPS000280179200IPR007087Zinc finger, C2H2
SuperFamilySSF563992.69E-19202413No hitNo description
Gene3DG3DSA:3.90.228.101.6E-12205414IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MAPLPFLSDQ TKSQTRLSSD SKKNRNKKTT PPPHQTPTLK QTQKLKQKTI SSTSSSWSQI  60
KNLLSCKQIE GPRVHDPSKI TLSSCGSSLC KFSDVIYGNA RVIHRSDHSP ESSNLGQDGG  120
LLIRKPATRG SSSSVRSNGC SAYTSSSKAM HFRKLSGCYE CHMIVDPSRY PISPRIFACP  180
QCGEVFPKLE TLEIHQAVRH AVSELGPEDS GRNIVDIIFK SSWLRKDSPI YNIERILKVH  240
NTQRTIQRFE DCRDAVKSHS HASTRKEPRS AADGNELLRF HCTTVSCSLG SRGSTSLCSN  300
IPGCRVCTII RHGFHAKTLR LGGGSNEIKG VRTTASSGRA HDALRCFDQR RAMLVCRVIA  360
GRVRRVQSDA PEDENDSCLY DSVAGAAGVY TNLDDLAVLN PKAILPCFVV IYKVSEP
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00742.1_g00008.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2288790.0AK228879.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-20-B08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469334.10.0PREDICTED: uncharacterized protein LOC108841044
TrEMBLA0A078G8C20.0A0A078G8C2_BRANA; BnaC06g01230D protein
STRINGBra015598.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19162880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-154C2H2-like zinc finger protein