PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00756.1_g00011.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 62aa    MW: 7532.55 Da    PI: 7.3527
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00756.1_g00011.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM26.32.1e-087603577
                      NAM 35 kevdiykvePwdLp.k..........kvkaeekewyfFskrdkkyatgkrknra 77
                             +e++i++++Pwd+p            k+++++  wyf s+r+ ky +g+++nr+
  Rsa1.0_00756.1_g00011.1  7 REINICSLDPWDFPwFmflvyvsvqsKIESKDIVWYFLSRREIKYGNGNHQNRS 60
                             689***********64799999887766667779******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100511.368162IPR003441NAC domain
SuperFamilySSF1019411.31E-7760IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 62 aa     Download sequence    Send to blast
MESTLNREIN ICSLDPWDFP WFMFLVYVSV QSKIESKDIV WYFLSRREIK YGNGNHQNRS  60
KD
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00756.1_g00011.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02250.19e-11NAC domain containing protein 5