PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00769.1_g00009.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 372aa MW: 41003.8 Da PI: 6.9087

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00769.1_g00009.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.7	3.6e-12	309	354	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L++l+P+ ++ + a++L +Av+YIk+Lq Rsa1.0_00769.1_g00009.1 309 SIAERVRRTKISERMRKLQDLVPNM----DTQTNTADMLDLAVQYIKDLQ 354 689*******************7....79****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.072	303	353	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.75E-16	306	369	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.74E-12	307	358	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.0E-15	308	365	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.2E-13	309	359	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.9E-9	309	354	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010119	Biological Process	regulation of stomatal movement
GO:0042335	Biological Process	cuticle development
GO:0048573	Biological Process	photoperiodism, flowering
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MESEFQQHHF LLHDHQHQRP PRTSGLARYQ SAPSSYFSSF GESIEEFLDR PTSPETERIL 60 SGFLQTTDTS NTVDSFLHHT FSETDEKKPP EVKTEETTEV DDIPATVAMD VVEIPAAPGS 120 SGYASVVRSL GQNNKRPRER DDRTPPANNL ARHNSSPAGL FSSIDVETAY AAVMKNMGGF 180 GGGVNVMNTE ASSLTRGTKL PPPSMGTIPE IDDVKPVFSS RLPPRTLSGG FNRSFGNEGS 240 ASSKLIARTQ SGGLDQYKTK DEDSSASRRP PLAHHMSLPK SLSDIEQLLS DSIPCKIRAK 300 RGCATHPRSI AERVRRTKIS ERMRKLQDLV PNMDTQTNTA DMLDLAVQYI KDLQEQVKGL 360 EESRARCRCS CA

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MESEFQQHHF LLHDHQHQRP PRTSGLARYQ SAPSSYFSSF GESIEEFLDR PTSPETERIL  60
SGFLQTTDTS NTVDSFLHHT FSETDEKKPP EVKTEETTEV DDIPATVAMD VVEIPAAPGS  120
SGYASVVRSL GQNNKRPRER DDRTPPANNL ARHNSSPAGL FSSIDVETAY AAVMKNMGGF  180
GGGVNVMNTE ASSLTRGTKL PPPSMGTIPE IDDVKPVFSS RLPPRTLSGG FNRSFGNEGS  240
ASSKLIARTQ SGGLDQYKTK DEDSSASRRP PLAHHMSLPK SLSDIEQLLS DSIPCKIRAK  300
RGCATHPRSI AERVRRTKIS ERMRKLQDLV PNMDTQTNTA DMLDLAVQYI KDLQEQVKGL  360
EESRARCRCS CA

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00195	DAP	Transfer from AT1G51140	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00769.1_g00009.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018470859.1	0.0	PREDICTED: transcription factor bHLH122 isoform X2
Swissprot	Q9C690	0.0	BH122_ARATH; Transcription factor bHLH122
TrEMBL	A0A078GKU6	0.0	A0A078GKU6_BRANA; BnaC06g04380D protein
TrEMBL	A0A0D3CPX9	0.0	A0A0D3CPX9_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6GPY5	0.0	A0A3P6GPY5_BRAOL; Uncharacterized protein
STRING	Bo6g024810.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10547	26	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51140.1	1e-178	bHLH family protein

Publications ? help Back to Top
Yang Z, et al. Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase. Mol. Cell Proteomics, 2013. 12(12): p. 3559-82 [PMID:24043427] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Takahashi Y,Kinoshita T,Matsumoto M,Shimazaki K Inhibition of the Arabidopsis bHLH transcription factor by monomerization through abscisic acid-induced phosphorylation. Plant J., 2016. 87(6): p. 559-67 [PMID:27227462] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Takahashi Y,Ebisu Y,Shimazaki KI Reconstitution of Abscisic Acid Signaling from the Receptor to DNA via bHLH Transcription Factors. Plant Physiol., 2017. 174(2): p. 815-822 [PMID:28438792]