PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00778.1_g00015.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 444aa    MW: 49912 Da    PI: 6.2978
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00778.1_g00015.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS514.83.1e-157524411374
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                              l++lLl+cA++v+sg+l++a+a+L++ls l+sp+gd+mqR+aayfteALa+r+++s+++lykal++++t+++n+see+++++lf++
  Rsa1.0_00778.1_g00015.1  52 LIHLLLTCANHVASGSLQNANAALEQLSLLSSPEGDTMQRVAAYFTEALANRILKSWPGLYKALNATQTRTSNVSEEVHVRRLFFD 137
                              689*********************************************************************************** PP

                     GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeel 172
                              ++Pilk+s+l++N+aIlea+ege++vH+iD+d+s+++QW+aL+qa++sRpegpp+lRiTgv++    +ke l ++++rL++ Ae+l
  Rsa1.0_00778.1_g00015.1 138 MFPILKVSYLLTNRAILEAMEGEKMVHVIDLDASEPAQWLALIQAFNSRPEGPPHLRITGVHP----HKEVLDQMAHRLTEEAEKL 219
                              ***************************************************************....9****************** PP

                     GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll...................desvsles..erdevLklvkslsPk 237
                              ++pf+fn+ v+++le+l++++Lrvk+gEalaV++vlqlh++l                   ++s +l++  ++d++L++++slsPk
  Rsa1.0_00778.1_g00015.1 220 DIPFQFNP-VVSSLESLNVDQLRVKTGEALAVSSVLQLHNFLassdddflrkngyslsgdsASSFPLPNsgRIDRFLNAMWSLSPK 304
                              ********.799***********************************************99666666666699************* PP

                     GRAS 238 vvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaG 323
                              ++vv+eq++dhn+++++er+le+l++y+alfd+leak+pr+ ++rikvE++++g+ei+n++aceg+errerhe+lekW++r++ aG
  Rsa1.0_00778.1_g00015.1 305 IMVVTEQDSDHNGSTLMERLLESLYTYAALFDCLEAKVPRTCQDRIKVEKMFFGEEIKNIIACEGSERRERHEKLEKWSQRIDLAG 390
                              ************************************************************************************** PP

                     GRAS 324 FkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              F++vpls++a+ qa++ll+ +++dgy ++eesg++v++W+drpL+svSaWr
  Rsa1.0_00778.1_g00015.1 391 FGNVPLSYFAMLQARRLLQGYGFDGYILKEESGCAVICWQDRPLYSVSAWR 441
                              **************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.66426421IPR005202Transcription factor GRAS
PfamPF035141.1E-15452441IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MVAKFQEDNG TSSVASSPLQ VFSTMSLTRP TLISSPSSPF KDLKPEERGL YLIHLLLTCA  60
NHVASGSLQN ANAALEQLSL LSSPEGDTMQ RVAAYFTEAL ANRILKSWPG LYKALNATQT  120
RTSNVSEEVH VRRLFFDMFP ILKVSYLLTN RAILEAMEGE KMVHVIDLDA SEPAQWLALI  180
QAFNSRPEGP PHLRITGVHP HKEVLDQMAH RLTEEAEKLD IPFQFNPVVS SLESLNVDQL  240
RVKTGEALAV SSVLQLHNFL ASSDDDFLRK NGYSLSGDSA SSFPLPNSGR IDRFLNAMWS  300
LSPKIMVVTE QDSDHNGSTL MERLLESLYT YAALFDCLEA KVPRTCQDRI KVEKMFFGEE  360
IKNIIACEGS ERRERHEKLE KWSQRIDLAG FGNVPLSYFA MLQARRLLQG YGFDGYILKE  420
ESGCAVICWQ DRPLYSVSAW RCRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-71354431380Protein SCARECROW
5b3h_D3e-71354431380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00778.1_g00015.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893010.0AC189301.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB030D08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018486060.10.0PREDICTED: scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A078HGZ10.0A0A078HGZ1_BRANA; BnaC06g03620D protein
TrEMBLA0A0D3CPR60.0A0A0D3CPR6_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FPV30.0A0A3P6FPV3_BRAOL; Uncharacterized protein (Fragment)
STRINGBo6g022200.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40982759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]