PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00779.1_g00015.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 229aa    MW: 25773.4 Da    PI: 6.5037
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00779.1_g00015.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.000256385123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ++C+ C+k+F ++  L  H  +H
  Rsa1.0_00779.1_g00015.1 63 FQCKGCKKVFASHQALGGHRASH 85
                             89**************9999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139125.0E-96287IPR007087Zinc finger, C2H2
PROSITE profilePS501579.8476390IPR007087Zinc finger, C2H2
SMARTSM003550.276385IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
SuperFamilySSF576676.71E-5133159No hitNo description
PfamPF139128.0E-13134158IPR007087Zinc finger, C2H2
SMARTSM003550.51135157IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.307135157IPR007087Zinc finger, C2H2
PROSITE patternPS000280137157IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MFNSQGQHDE DNMSRLPWKR VRDEDEELAN CLVLLSNSGS DYNKGHGHIK DKTVKKQKTA  60
HVFQCKGCKK VFASHQALGG HRASHKKVKG CFASQDKKAE EEEEEEYKVD DDDEEEEEEE  120
EDKPHIITRK KTNAHECTIC HRVFSSGQAL GGHKRCHWLT PSTNYLRMTP LNDSSTHHHH  180
SQPLDQPSLD LNLACVDPTV MSVGRDGGGN NLNATSSNSW LKLASGDWS
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00779.1_g00015.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895100.0AC189510.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB089D07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018514020.11e-123PREDICTED: zinc finger protein ZAT2-like
TrEMBLA0A3P6CRU31e-125A0A3P6CRU3_BRAOL; Uncharacterized protein
STRINGBo4g187280.11e-123(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138951318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.12e-26C2H2-like zinc finger protein