PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00780.1_g00008.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 360aa    MW: 39240.1 Da    PI: 10.0351
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00780.1_g00008.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.1e-05828323
                             ETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                             C+ C+k F+r  nL+ H r+H
  Rsa1.0_00780.1_g00008.1  8 CEVCNKGFKREQNLQLHGRVH 28
                             *****************9998 PP
2zf-C2H213.60.000282104123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              +kC++C+ks+  +++ k+H + +
  Rsa1.0_00780.1_g00008.1  82 WKCGKCPKSYALQYDWKTHSKIC 104
                              58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.25E-5528No hitNo description
Gene3DG3DSA:3.30.160.603.6E-6528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.26628IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.261628IPR007087Zinc finger, C2H2
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM00355584777IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.25E-577102No hitNo description
SMARTSM0035521082102IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MTTNRFLCEV CNKGFKREQN LQLHGRVHDL PWNLKQKSEK EVRRKVYICP EPTCVHHDPS  60
RALGDLTGIK KHYYRKHCEK KWKCGKCPKS YALQYDWKTH SKICGTKVCR CDCGTIFFAK  120
IWTVESAINP MVSFPGMGAA GGGSGGRHGF YGGASSALRK QDFYASDLSA RGGHGFYGGA  180
ASALPHNQFG NNSNTGLTPP AAEYNLTTLR SQRDLSGLGD RINNNNNITN LGYFQNNTKN  240
SNQALFTGGA ANNDNSALLR GLTSSSTSLS SVIVNGFGKN QNGNLHGLVN SVPVTKNQQG  300
WSHSKVFGPH FGNNLSMGRA NMFTFDFLGV NGGIVGSGRN PDPLDTELKF SSPKHPFGNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-1279120445Zinc finger protein JACKDAW
5b3h_F3e-1279120445Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00780.1_g00008.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013740255.11e-151protein indeterminate-domain 6, chloroplastic-like
SwissprotQ8RWX71e-116IDD6_ARATH; Protein indeterminate-domain 6, chloroplastic
TrEMBLA0A3N6RXQ51e-153A0A3N6RXQ5_BRACR; Uncharacterized protein
STRINGBra023223.1-P1e-150(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14580.21e-114C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Bustillo-Avendaño E, et al.
    Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis.
    Plant Physiol., 2018. 176(2): p. 1709-1727
    [PMID:29233938]