PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00783.1_g00007.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 185aa    MW: 21031.1 Da    PI: 9.487
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00783.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.58.5e-153075148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             rg+ + +E +ll +++k+lG++ W++Ia +++ gRt +++k++w++y+
  Rsa1.0_00783.1_g00007.1 30 RGKLSSDEVDLLSRLHKLLGNR-WSLIAGRLP-GRTTNDIKNYWNTYM 75
                             78999*****************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.252124IPR017877Myb-like domain
SuperFamilySSF466891.38E-18679IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-5823IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.6E-212478IPR009057Homeodomain-like
PROSITE profilePS5129422.6762579IPR017930Myb domain
SMARTSM007171.2E-122977IPR001005SANT/Myb domain
PfamPF002493.9E-133074IPR001005SANT/Myb domain
CDDcd001677.35E-103475No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MSIFGFVGLN RCRKSCRLRW LNYLKPSIKR GKLSSDEVDL LSRLHKLLGN RWSLIAGRLP  60
GRTTNDIKNY WNTYMSKKPD PFCKTEMKEQ NPTGSETTPA QKFDVIKPQP RSFFNNNSLS  120
HVNGLPEVDI DDGITCNKAD EKYEHVENVM DAKSMWWENL LVEVGGVGAV DPAAMGTVLT  180
RQVLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-16118040109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00783.1_g00007.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018461613.11e-131PREDICTED: transcription factor MYB114-like
SwissprotQ9FNV96e-66MY113_ARATH; Transcription factor MYB113
TrEMBLE5D8F57e-77E5D8F5_BRAOB; MYB2
STRINGBo6g100940.11e-76(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.12e-68myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]