PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00786.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 186aa    MW: 21259.5 Da    PI: 9.1657
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00786.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY35.91.5e-111121442051
                              S-EEEEEE-STT---EEEEEE-S.SSTTEEEEE CS
                     WRKY  20 fprsYYrCtsagCpvkkkversa.edpkvveit 51 
                              f +sYY+Cts+gCpv+k+ver+a +dpk+++it
  Rsa1.0_00786.1_g00004.1 112 FCKSYYKCTSSGCPVRKHVERQAsHDPKATTIT 144
                              689*****************9752799988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-1753145IPR003657WRKY domain
PROSITE profilePS5081111.53163154IPR003657WRKY domain
SMARTSM007746.8E-768150IPR003657WRKY domain
SuperFamilySSF1182909.15E-8112144IPR003657WRKY domain
PfamPF031061.8E-8112145IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MWVYREGFWR STTCHRPLSK LVNLNNLLQL TGVVKLRRLD GIMETTPLVK PIREPRVVFQ  60
ILGTIVILYD GNMWDEYGQK VVRGYSNSSL DSLWNWVWNM EDIMLRNVPL AFCKSYYKCT  120
SSGCPVRKHV ERQASHDPKA TTITMYSLQS LAAIMTTSLG SDQMKHTPSA SGVGILSDEH  180
DHSHRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00786.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006413158.11e-29probable WRKY transcription factor 20 isoform X1
RefseqXP_024005405.16e-30probable WRKY transcription factor 20 isoform X2
RefseqXP_024005407.16e-30probable WRKY transcription factor 20 isoform X3
RefseqXP_024005408.16e-30probable WRKY transcription factor 20 isoform X4
TrEMBLE4MWM02e-28E4MWM0_EUTHA; mRNA, clone: RTFL01-11-P10
TrEMBLV4P5582e-28V4P558_EUTSA; Uncharacterized protein
STRINGXP_006413158.14e-29(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3783322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.12e-31WRKY family protein