PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00790.1_g00010.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 420aa    MW: 45759.9 Da    PI: 6.2829
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00790.1_g00010.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.51.7e-063153491554
                              HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH  15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              ++ ++++ L++l+ +      +K + a++L +A+eYIk L
  Rsa1.0_00790.1_g00010.1 315 KMSDRIAALQQLVSPF-----GKTDQASVLSEAIEYIKFL 349
                              899***********98.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.69300349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-4309355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.18E-6310354No hitNo description
SuperFamilySSF474592.62E-11313366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-11314358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MGDNHDFINS GSWWKVSSSS SISSSSSMSA NSMESGGSAV FHDKLHHSLA TDHHLQMIGL  60
GLSSQSHVDQ WNQSLLRGDS KAETSFGVML QENLNLDATS NANANTTSYQ LQESDPSHHQ  120
ALWRDPHINN SDFKPQLNMT SSNNRGFFLD HQFSPHGSSS TDSSTVTCQG FSSDNPSNNL  180
YGPTATTPNS SSAMFHQQQQ SNLGYSQFGS STGNYDQMAT GLRFSNNATF WSPAATVGNV  240
VPTHHDATSN FFPALQPPQI HAPSFDEQPK STSEIRDSSS CEVKRVGLGG DQPTAKRTKS  300
EPASSSPPFK VKKEKMSDRI AALQQLVSPF GKTDQASVLS EAIEYIKFLH QQVSALSNPY  360
MKSGASLQHQ QSDHPKELEV SEEPDLRSRG LCLVPVSSTF PVTQDTTVDF WTPTFGGTFR
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00790.1_g00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018466225.10.0PREDICTED: transcription factor bHLH123-like isoform X1
SwissprotQ8GXT30.0BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A078J1B10.0A0A078J1B1_BRANA; BnaA01g36370D protein
TrEMBLA0A398AX140.0A0A398AX14_BRACM; Uncharacterized protein
STRINGBra023939.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40242553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]