PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00792.1_g00007.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HD-ZIP
Protein Properties Length: 544aa    MW: 60875.8 Da    PI: 6.7805
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00792.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.21e-16294348256
                              T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              rk+ +++k+q   Le+ F+ +++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  Rsa1.0_00792.1_g00007.1 294 RKKLRLNKQQSALLEDSFKLHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTK 348
                              778899***********************************************98 PP
2HD-ZIP_I/II117.76.4e-38294383191
              HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                              +kk+rl+k+q++lLE+sF+ +++L+p++K+ lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL ke ++
  Rsa1.0_00792.1_g00007.1 294 RKKLRLNKQQSALLEDSFKLHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLLKELQD 379
                              69************************************************************************************ PP

              HD-ZIP_I/II  87 Lreel 91 
                              L+ +l
  Rsa1.0_00792.1_g00007.1 380 LK-AL 383
                              *9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd062221.14E-1066172No hitNo description
SuperFamilySSF530982.28E-567171IPR012337Ribonuclease H-like domain
PfamPF134562.0E-9100172No hitNo description
PROSITE patternPS002210210218IPR022357Major intrinsic protein, conserved site
Gene3DG3DSA:1.10.10.601.5E-15288351IPR009057Homeodomain-like
PROSITE profilePS5007116.536290350IPR001356Homeobox domain
SuperFamilySSF466893.04E-17292358IPR009057Homeodomain-like
SMARTSM003894.2E-14292354IPR001356Homeobox domain
CDDcd000862.59E-14294351No hitNo description
PfamPF000463.7E-14294348IPR001356Homeobox domain
PROSITE patternPS000270325348IPR017970Homeobox, conserved site
SMARTSM003402.1E-24350393IPR003106Leucine zipper, homeobox-associated
PfamPF021832.9E-9350384IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006810Biological Processtransport
GO:0016020Cellular Componentmembrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005215Molecular Functiontransporter activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MWFIWKARNE KVFNGETIPP PDTVSHANRE EEEWRVSQVI TSHNTISAPP RHENAGVLNR  60
SPLPRCQVDA SWVTSSSFFG GGFVFDIEPG SQTYGSFGMF QVSSPLHAEF NALLYAMKSS  120
LQLGFTSMSF ESDCLQLVKL INEEEKWPSL ASEWNEFTYL VPEFDDFSIS FIMGLDDSCN  180
TGLVLGLGFS PTHNSYNYAI KKSSATVDHH VNPSLTLSLS GESYKVEMTV SGAGDQIYGQ  240
TSSHSGISSF SSGRIKRERE VCGDGEEEAE ETAKRVLCSR VRDDHENEEG VSARKKLRLN  300
KQQSALLEDS FKLHSTLNPK QKQVLARQLN LRPRQVEVWF QNRRARTKLK QTEVDCEFLK  360
KCCETLTDEN RRLLKELQDL KALKMSQPFY MHMPPATLMM CPSCERLGGG GAGGGGGSTV  420
AVDGGTVKGA FSIVTKPRIY SPFMKPSAAF AEREIRLWNK AQDINTRGSV QAETRPLPII  480
PGRWCFTDAS WKDGDFSGQG WYSILEGFVD LMGARNTRAS LSPLHAEVEA LIWALECMRN  540
LRQR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1342350RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00792.1_g00007.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018447881.10.0PREDICTED: homeobox-leucine zipper protein HAT22-like
SwissprotP466041e-141HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A3P6BBV51e-161A0A3P6BBV5_BRAOL; Uncharacterized protein
STRINGBra010612.1-P1e-154(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16712886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-131HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]