PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00800.1_g00003.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Trihelix

Protein Properties

Length: 354aa MW: 39214.2 Da PI: 9.1394

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00800.1_g00003.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	69.4	6.9e-22	56	147	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpy 81 +W+ +e+ aLi+++r+++++l+rg+lk+++Weev++++ + +++++qC++k+e+l+kry+ + +++++ ++ +s++++ Rsa1.0_00800.1_g00003.1 56 CWSLEETTALIDGYRDKWHALNRGNLKANHWEEVAEAVagncPDVTPRKTAVQCRHKMEKLRKRYRTEIQRARSVpVARFVSSWVH 141 7**********************************988878888899*********************977999** PP trihelix 82 fdqlea 87 f+++ea Rsa1.0_00800.1_g00003.1 142 FKRMEA 147 **85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0045	53	119	IPR001005	SANT/Myb domain
Pfam	PF13837	9.6E-20	55	148	No hit	No description
PROSITE profile	PS50090	6.33	57	117	IPR017877	Myb-like domain
SMART	SM00595	1.3E-13	64	153	IPR006578	MADF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MSDPDSPLEQ DPIQDPLPAR NESSPPQPDD SVTDLKIASA PAASASKNSR RLPPPCWSLE 60 ETTALIDGYR DKWHALNRGN LKANHWEEVA EAVAGNCPDV TPRKTAVQCR HKMEKLRKRY 120 RTEIQRARSV PVARFVSSWV HFKRMEAMED RPGSKPGGGE EERDEVYGGG GSVGRTRAMF 180 FNRNGTAGGS SSSGGGIRIR IPTGVSIAQP GPRFPGKIDP KYTASGSSRL GRVGAGSSYG 240 ARGVRVEGGG GKRGREMMMM TTEEEEEREE CDDPMVEIAS AIKQLGDTLL RTEERKMEMT 300 REIEAMRMDM EMKRTKMILE SQQRIVEAFA KTMSENLEEK KKKSRRVSSL PNDS

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MSDPDSPLEQ DPIQDPLPAR NESSPPQPDD SVTDLKIASA PAASASKNSR RLPPPCWSLE  60
ETTALIDGYR DKWHALNRGN LKANHWEEVA EAVAGNCPDV TPRKTAVQCR HKMEKLRKRY  120
RTEIQRARSV PVARFVSSWV HFKRMEAMED RPGSKPGGGE EERDEVYGGG GSVGRTRAMF  180
FNRNGTAGGS SSSGGGIRIR IPTGVSIAQP GPRFPGKIDP KYTASGSSRL GRVGAGSSYG  240
ARGVRVEGGG GKRGREMMMM TTEEEEEREE CDDPMVEIAS AIKQLGDTLL RTEERKMEMT  300
REIEAMRMDM EMKRTKMILE SQQRIVEAFA KTMSENLEEK KKKSRRVSSL PNDS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00800.1_g00003.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189399	0.0	AC189399.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB056I08, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018476963.1	0.0	PREDICTED: trihelix transcription factor ASIL2-like
TrEMBL	A0A0D3B6R1	0.0	A0A0D3B6R1_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6AD99	0.0	A0A3P6AD99_BRAOL; Uncharacterized protein
STRING	Bo3g037360.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8963	25	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	1e-122	Trihelix family protein