PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00817.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 528aa    MW: 57973.8 Da    PI: 7.6048
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00817.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.92e-09179202326
                              S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                              ++ C ++++t tCk+G+ CkF H+
  Rsa1.0_00817.1_g00003.1 179 EKDCTHYMQTRTCKFGEGCKFDHP 202
                              678********************8 PP
2zf-CCCH33.95.1e-11228254127
                              --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                              ++++ C+++ +t  CkyG rCkF+H++
  Rsa1.0_00817.1_g00003.1 228 PGEPDCPYYVKTQRCKYGVRCKFNHPK 254
                              5789*********************96 PP
3zf-CCCH38.22.4e-12273297327
                              S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                              +++C f+++tG Ck+G +CkF+H++
  Rsa1.0_00817.1_g00003.1 273 EAPCTFYMKTGKCKFGLTCKFHHPK 297
                              789********************96 PP
4zf-CCCH38.61.7e-12343369127
                              --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                              ++++ C+f+++tG CkyG++C+++H++
  Rsa1.0_00817.1_g00003.1 343 PGEVDCPFYLKTGSCKYGATCRYNHPE 369
                              57899********************96 PP
5zf-CCCH41.22.8e-13423448126
                              --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                              +++++C+++++tG+Ck+G+rC+F+H+
  Rsa1.0_00817.1_g00003.1 423 PGQPECDYYMKTGECKFGERCRFHHP 448
                              5789*********************8 PP
6zf-CCCH41.22.8e-13480502527
                              --SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                              +C+++++tGtCkyG++CkF H+p
  Rsa1.0_00817.1_g00003.1 480 NCPYYMKTGTCKYGATCKFDHPP 502
                              7********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.521176204IPR000571Zinc finger, CCCH-type
SMARTSM003560.41178203IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-5178203IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-7179202IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.873227255IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-5227254IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-8229254IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-5232254IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-4233252IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5270297IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.14270298IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-10273297IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-6273298IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-5275296IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-7342369IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.554342370IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-10344369IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5346370IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4348369IPR000571Zinc finger, CCCH-type
SMARTSM003566.4E-7422449IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.788422450IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-10424448IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.09E-6424453IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-5428450IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.375475503IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-7475502IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-6479502IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-11479502IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5481500IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MASHRHQLFT YALQPSLAAA STVSPAAPPQ PQPQPQPNLN LYGSSAADRY YPDATYRFLS  60
RDGSESLTNY PSSSSSSMYH YNLPNPATAS SHLAYPQLIQ QQQQQEAWPP GVEAPAAAAV  120
EPLPPGVKRT SEALYYPTLY GAHNTMGQTE AWYTTDYLTK RLKLETTSHL PVYPQRAGEK  180
DCTHYMQTRT CKFGEGCKFD HPIWVPEGGI PDWKEAPVVP NDEYPERPGE PDCPYYVKTQ  240
RCKYGVRCKF NHPKTAAAVT VENPDALPER PSEAPCTFYM KTGKCKFGLT CKFHHPKDIQ  300
LPSSSQDNGS TEAVTSDPDT TNNPHVTFAP AAYHNSKGLP VRPGEVDCPF YLKTGSCKYG  360
ATCRYNHPER TAFTPQATGI NYPLVSPTAA SVNLGLINSA ASLYQTLAQP TLGALTATYP  420
QRPGQPECDY YMKTGECKFG ERCRFHHPAD RLNATSKQAP QQPNVKLSLA GYPRREGAQN  480
CPYYMKTGTC KYGATCKFDH PPPGEVMAKT ASEADAAPPG EGTDTTTQ
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00817.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018485593.10.0PREDICTED: zinc finger CCCH domain-containing protein 37
SwissprotQ941Q30.0C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A3N6TDT90.0A0A3N6TDT9_BRACR; Uncharacterized protein
STRINGBra034744.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97612836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0floral homeotic protein (HUA1)