PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00820.1_g00014.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 214aa MW: 24150.6 Da PI: 7.7299

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00820.1_g00014.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.2	4e-10	64	110	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 rE++RR+ +N++f L + l + + +K +K +iL A++ +++L Rsa1.0_00820.1_g00014.1 64 RACREKKRREMLNDKFMDLSSFLEPT---RTPKTDKPAILDDAIRVVNQL 110 568********************9...9**************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.01E-12	51	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.33E-7	57	111	No hit	No description
PROSITE profile	PS50888	12.29	59	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.0E-7	65	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.3E-8	65	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-11	66	132	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MCNTAATLSL KLDSIGFGSS QLENEQVCCG VVEINSSSSV KEELEEECSR KRGRSGSCSK 60 PGTRACREKK RREMLNDKFM DLSSFLEPTR TPKTDKPAIL DDAIRVVNQL RGEAHELKET 120 NQKLLEEIKT LKAEKNELRE EKLVLKADKE KMEQQLKSIP SPGFMPPHPA AFHQNKMAVY 180 ASYGYYPNMP MMPYLLPPSQ RDTSQDQQNC SFAA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	49	71	RKRGRSGSCSKPGTRACREKKRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00820.1_g00014.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018486282.1	1e-150	PREDICTED: transcription factor bHLH34
Swissprot	Q9LTC7	8e-96	BH034_ARATH; Transcription factor bHLH34
TrEMBL	M4DEK1	1e-130	M4DEK1_BRARP; Uncharacterized protein
STRING	Bra014923.1-P	1e-131	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4026	26	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23210.1	1e-71	bHLH family protein

Publications ? help Back to Top
Li X,Zhang H,Ai Q,Liang G,Yu D Two bHLH Transcription Factors, bHLH34 and bHLH104, Regulate Iron Homeostasis in Arabidopsis thaliana. Plant Physiol., 2016. 170(4): p. 2478-93 [PMID:26921305] Liang G,Zhang H,Li X,Ai Q,Yu D bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1743-1755 [PMID:28369511] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]