PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00826.1_g00016.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family CAMTA
Protein Properties Length: 950aa    MW: 106163 Da    PI: 4.8172
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00826.1_g00016.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1178.21.1e-55201363118
                     CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYah 87 
                              +e ++rwl++ ei++iL+n++++++++e++++p sgs++L++rk++r+frkDG++w+kk+dgktv+E+he+LK g+++vl+cyYah
  Rsa1.0_00826.1_g00016.1  20 SEaRNRWLRPPEICEILQNYRQFQISTEPPSTPASGSVFLFDRKVLRFFRKDGHNWRKKRDGKTVKEAHERLKAGSIDVLHCYYAH 105
                              4449********************************************************************************** PP

                     CG-1  88 seenptfqrrcywlLeeelekivlvhylevk 118
                              +++n++fqrr+yw+L+eel++iv+vhylevk
  Rsa1.0_00826.1_g00016.1 106 GHDNENFQRRSYWMLQEELSHIVFVHYLEVK 136
                              ****************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143779.69215141IPR005559CG-1 DNA-binding domain
SMARTSM010762.7E-8018136IPR005559CG-1 DNA-binding domain
PfamPF038591.1E-4821135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.109.5E-4416503IPR013783Immunoglobulin-like fold
SuperFamilySSF812968.75E-16417502IPR014756Immunoglobulin E-set
PfamPF018331.5E-4417502IPR002909IPT domain
Gene3DG3DSA:1.25.40.201.4E-15580713IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.096583710IPR020683Ankyrin repeat-containing domain
CDDcd002042.91E-11607710No hitNo description
SuperFamilySSF484032.18E-15607713IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.137651683IPR002110Ankyrin repeat
SMARTSM000150.92807829IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.029809837IPR000048IQ motif, EF-hand binding site
PfamPF006120.0038810828IPR000048IQ motif, EF-hand binding site
SMARTSM0001571830852IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.089831859IPR000048IQ motif, EF-hand binding site
PfamPF006120.12833846IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 950 aa     Download sequence    Send to blast
MEEAKRFSPN NELDVGQILS EARNRWLRPP EICEILQNYR QFQISTEPPS TPASGSVFLF  60
DRKVLRFFRK DGHNWRKKRD GKTVKEAHER LKAGSIDVLH CYYAHGHDNE NFQRRSYWML  120
QEELSHIVFV HYLEVKGSRV STSYNRMQRT PDSAHFSHES GEVFTSERDG YASGIINQYD  180
HSNHSQATDS ASVNGVHTPE FEDVESAYNQ PGNSIVYSHP QPASTDFDPS YQMSLTPRDS  240
YQTELSRVPI ITDSSRTING PEATNGLRNK KSIDSQTWEE ILGNCGSGAE GLPLQPNSEH  300
EVLDQILEDS SFTMQDFASL QGSMLKSQDQ ELNGLPSSEK APYLSTMKQH LLDGALGEEG  360
LKKVDRFSRW MSKELGELGG DVGVIADANE SFTNSSSTAL DGYVMSPSLS KEQLFSIIDF  420
APNWTYVGCE VNVLVTGKFL KTREEAETGE WSCMFGQTEV PADVIADGIL QCVAPVHEAG  480
RVPFYVTCSN RLACSEVREF EYKVLESQAF GRETDESTAC NNSIESLEAR FVKLLCSKSD  540
DYSRSSNNAG DLSQVSEKIS LLLFENDDQL DQMLMNEISQ ENMKNNLLQE ALKESLHSWL  600
LQKIAEEGGK GPNVLDEGGQ GILHFAAALG HNWALEPTIV AGVSVDFRDV NGWTALHWAA  660
FFGRELVIGS LIALGASPGT LTDPNPDFPS GSTPSDLAYA NGYKGIAGYL SEYALTAHVS  720
LLSLNESNAE TSLPSPSSSS LTDSLTAVRN ATQAAARIHQ VFRAQSFQKK QLKEFGDRKF  780
GMSEERALSM LAPKTTHKPG RAHSDDSVQA AAIRIQNKFR GYKGRKDYLI TRQRIIKIQA  840
HVRGYQMEDG TEKKEEDDDF FKQGRKQTEE RLQKALARVK SMAQYPEARD QYRRLLNVVN  900
DIQESKVEKA LENSEEATCF DDDDLIDIEA LLGDDDDTLM MPMSSTFWNT
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:18298954, ECO:0000269|PubMed:19122675, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:21900483, ECO:0000269|PubMed:22345509, ECO:0000269|PubMed:22371088, ECO:0000269|PubMed:23072934, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25157030, ECO:0000269|PubMed:28351986, ECO:0000269|PubMed:28407487, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00826.1_g00016.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269|PubMed:11162426, ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:22345509}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5066970.0AF506697.1 Arabidopsis thaliana calmodulin-binding transcription factor SR1 (SR1) mRNA, complete cds.
GenBankAY5100250.0AY510025.1 Arabidopsis thaliana ethylene-induced calmodulin-binding protein 1 mRNA, complete cds.
GenBankBT0024590.0BT002459.1 Arabidopsis thaliana Unknown protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009140343.10.0PREDICTED: calmodulin-binding transcription activator 3-like
SwissprotQ8GSA70.0CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBLA0A397ZKJ30.0A0A397ZKJ3_BRACM; Uncharacterized protein
STRINGBra030248.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86012535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1
Publications ? help Back to Top
  1. Zhang L,Du L,Shen C,Yang Y,Poovaiah BW
    Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling.
    Plant J., 2014. 78(2): p. 269-81
    [PMID:24528504]
  2. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  3. Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ
    Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae.
    Front Plant Sci, 2016. 7: p. 177
    [PMID:26973658]
  4. Benn G, et al.
    Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60
    [PMID:27432993]
  5. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  6. Lolle S, et al.
    Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles.
    Cell Host Microbe, 2017. 21(4): p. 518-529.e4
    [PMID:28407487]
  7. Kim YS, et al.
    CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection.
    Plant Cell, 2017. 29(10): p. 2465-2477
    [PMID:28982964]
  8. Jacob F, et al.
    A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana.
    New Phytol., 2018. 217(4): p. 1667-1680
    [PMID:29226970]