PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00832.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 287aa    MW: 32172.7 Da    PI: 7.5021
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00832.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA64.21.5e-20212246135
                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                              C++C ttkTp+WR+gp+g+ktLCnaCG+++r+ +l
  Rsa1.0_00832.1_g00004.1 212 CTHCETTKTPQWREGPNGPKTLCNACGVRFRSGRL 246
                              *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.9E-17206256IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-15206268No hitNo description
Gene3DG3DSA:3.30.50.101.2E-14211243IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.09E-17211260No hitNo description
PROSITE profilePS5011411.846211242IPR000679Zinc finger, GATA-type
PROSITE patternPS003440212237IPR000679Zinc finger, GATA-type
PfamPF003202.4E-18212246IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MNWLPEEELK GLSDNFFDDF INHIDFPLED IDTTNGEGGD WDAQFKELEP PPMDMFTSFP  60
SEFNSCVAIK AGTQKALPVL KQSSASASIN NTVHQSSSHP EVKASKLFQS SSPVSVLESS  120
DGSFSPQNSQ RLSFPVKGMR SKRRRPTTLR LRYIYPFEPE KLIPPGESES ETYYSSSEQQ  180
AKKKRKISPS SSYSSASSSS EGLNSDGTVW KCTHCETTKT PQWREGPNGP KTLCNACGVR  240
FRSGRLVPEY RPASSPTFIP SVHSNSHRKI IEMRRKEGDQ FDDTRAW
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00130DAPTransfer from AT1G08010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00832.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895184e-76AC189518.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB090M17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018491745.11e-179PREDICTED: GATA transcription factor 11
SwissprotQ6DBP81e-131GAT11_ARATH; GATA transcription factor 11
TrEMBLA0A0D3C8E91e-162A0A0D3C8E9_BRAOL; Uncharacterized protein
TrEMBLA0A3P6EC501e-162A0A3P6EC50_BRAOL; Uncharacterized protein
STRINGBo5g008670.11e-163(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16812589
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.21e-105GATA transcription factor 11