PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00832.1_g00013.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family LBD
Protein Properties Length: 209aa    MW: 23316.6 Da    PI: 4.734
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00832.1_g00013.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260133.96.2e-4236134199
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                              +CaaCk+lrr+C ++Cvlapyfp ++p+kf ++h++FGasn++kll++lpe++r+da++s+vyeA ar+rdP+yG++g i +lq+q
  Rsa1.0_00832.1_g00013.1  36 PCAACKILRRRCGDKCVLAPYFPPTEPAKFTIAHRVFGASNIIKLLQELPESQRTDAVNSMVYEAGARIRDPIYGCAGAIYNLQRQ 121
                              7************************************************************************************* PP

                   DUF260  87 leqlkaelallke 99 
                              +++l+a+la+ + 
  Rsa1.0_00832.1_g00013.1 122 VSELQAQLAKSQV 134
                              ********99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.92635136IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-4136132IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MLDMEIKCDA SAAIVSASPT SSPPLPQLSP RLVLSPCAAC KILRRRCGDK CVLAPYFPPT  60
EPAKFTIAHR VFGASNIIKL LQELPESQRT DAVNSMVYEA GARIRDPIYG CAGAIYNLQR  120
QVSELQAQLA KSQVEIVSMQ LQRSNLLELI HNMDQPNQEQ HNMSFDSSFG NCDEFINSPD  180
EESNDFGFLE DNKYSNTKAS MLWCDPLWI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-413513710112LOB family transfactor Ramosa2.1
5ly0_B4e-413513710112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00832.1_g00013.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018480879.11e-154PREDICTED: LOW QUALITY PROTEIN: LOB domain-containing protein 1-like
SwissprotQ9SK081e-102LBD11_ARATH; LOB domain-containing protein 11
TrEMBLA0A291LQX51e-135A0A291LQX5_BRARR; Transcription factor LBD1a
STRINGBra018675.1-P1e-133(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114128105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.11e-101LOB domain-containing protein 11