PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00853.1_g00007.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Dof

Protein Properties

Length: 360aa MW: 39281.1 Da PI: 9.3398

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00853.1_g00007.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.7	6.2e-39	64	125	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ++++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGg++rknk+sss Rsa1.0_00853.1_g00007.1 64 PQEKLNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKNKRSSS 125 6899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-26	63	115	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.0E-33	66	122	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.901	68	122	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	70	106	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MMNVKPMEHI MIPNNNTHQS NTTSNARPNT ILTSSGGVSA AGATVSGVSN NNNTPVVVER 60 KARPQEKLNC PRCNSTNTKF CYYNNYSLTQ PRYFCKGCRR YWTEGGSLRN VPVGGSSRKN 120 KRSSSSSSSN ILQTTPSSHG LTTTLPDLNP PIIFSNQIPN KSKGSQDLNL LSFPVMQDQH 180 HHQHVHMSKF LQMHKMEGNG NMTHQQPSSS SSLYGSSSSP VSALELLRTG VNVSSRSGIN 240 AFMPSGPMMD SSHNVMYTSS GFPTMVDYKT SNLSFSTDNQ GLGHNNNNNS SGDAHSDHHQ 300 GRVLFPFGDQ MKELSSSITQ EVDHDDNQQQ KSHGNNNNNP SPNNGYWSGM FSTTGGGSSW

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MMNVKPMEHI MIPNNNTHQS NTTSNARPNT ILTSSGGVSA AGATVSGVSN NNNTPVVVER  60
KARPQEKLNC PRCNSTNTKF CYYNNYSLTQ PRYFCKGCRR YWTEGGSLRN VPVGGSSRKN  120
KRSSSSSSSN ILQTTPSSHG LTTTLPDLNP PIIFSNQIPN KSKGSQDLNL LSFPVMQDQH  180
HHQHVHMSKF LQMHKMEGNG NMTHQQPSSS SSLYGSSSSP VSALELLRTG VNVSSRSGIN  240
AFMPSGPMMD SSHNVMYTSS GFPTMVDYKT SNLSFSTDNQ GLGHNNNNNS SGDAHSDHHQ  300
GRVLFPFGDQ MKELSSSITQ EVDHDDNQQQ KSHGNNNNNP SPNNGYWSGM FSTTGGGSSW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the activation of a component that would trigger germination as a consequence of red light perception.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00853.1_g00007.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352859	0.0	AK352859.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-17-N20.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018477396.1	0.0	PREDICTED: dof zinc finger protein DOF2.5-like isoform X2
Swissprot	Q9ZPY0	0.0	DOF25_ARATH; Dof zinc finger protein DOF2.5
TrEMBL	R0HPY2	0.0	R0HPY2_9BRAS; Uncharacterized protein
STRING	XP_006294447.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2528	26	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46590.1	1e-133	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]