PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00856.1_g00007.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 513aa    MW: 57093.5 Da    PI: 5.6067
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00856.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS434.57.8e-1331435132374
                     GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                              + +L+ecA+av+++d +++++l+++l++++s +g+p+qRl ay++e+L arla+s+s++y+ +++++ +     e l+++++++e+
  Rsa1.0_00856.1_g00007.1 143 IGTLYECAKAVENHDVAMTDWLISHLQQMVSVSGEPVQRLGAYLLEGLIARLASSGSSIYREMRCKDPT---GPELLTYMHILYEA 225
                              5689****************************************************************9...9************* PP

                     GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg..skeeleetgerLakfAe 170
                              +P++kf++  aN aI eav++e+ vHiiDf+isqG+QW++L++aL +Rp + +p++RiTg+++p+s+  ++  le +g rL k+Ae
  Rsa1.0_00856.1_g00007.1 226 CPYFKFGYESANGAIAEAVKNESSVHIIDFQISQGGQWVSLIRALGARPgGRAPRVRITGIDDPRSSfaRQGGLELVGLRLGKLAE 311
                              *************************************************66689**********999999**************** PP

                     GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
                                gvpfef+  +a  ++++e+e+L v+ gEalaVn+ l lh+++desv++e++rd++L+lvk+lsPkvv++veqea++n+++Fl r
  Rsa1.0_00856.1_g00007.1 312 MHGVPFEFRG-AALCCTEVETEKLGVRDGEALAVNFPLVLHHMPDESVTVENHRDRLLRLVKRLSPKVVTLVEQEANTNTAPFLPR 396
                              **********.899************************************************************************ PP

                     GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                              f+e++++y a+f+s+++kl+r+++eri+vE+++l+re+vn+vaceg er+erhe l+kWr+r+++aGF+p+pls+++++++k ll+
  Rsa1.0_00856.1_g00007.1 397 FVETMSHYLAVFESVDVKLGRDHKERINVEQHCLAREVVNLVACEGVEREERHEPLGKWRSRFRMAGFEPYPLSSYVNATIKGLLE 482
                              ************************************************************************************** PP

                     GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                               ++++ y++ee++g+l+lgWk++pLv+ +aWr
  Rsa1.0_00856.1_g00007.1 483 SYSEK-YTLEERDGALYLGWKNQPLVTSCAWR 513
                              ***65.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.767116494IPR005202Transcription factor GRAS
PfamPF035142.7E-130143513IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MEATKKHIII QDGSSMFYHQ PSSVQQMNLS VQTFDSYCTL ESSSGPTSHP CPDNPTSSTT  60
SFSSNGSPVS QANNNSPLSG SSSATNNNET ELSLMLKDLE TAMMEPELDN NSFNSYEFGQ  120
QQQQQYRAVS SAMEMMISKG DLIGTLYECA KAVENHDVAM TDWLISHLQQ MVSVSGEPVQ  180
RLGAYLLEGL IARLASSGSS IYREMRCKDP TGPELLTYMH ILYEACPYFK FGYESANGAI  240
AEAVKNESSV HIIDFQISQG GQWVSLIRAL GARPGGRAPR VRITGIDDPR SSFARQGGLE  300
LVGLRLGKLA EMHGVPFEFR GAALCCTEVE TEKLGVRDGE ALAVNFPLVL HHMPDESVTV  360
ENHRDRLLRL VKRLSPKVVT LVEQEANTNT APFLPRFVET MSHYLAVFES VDVKLGRDHK  420
ERINVEQHCL AREVVNLVAC EGVEREERHE PLGKWRSRFR MAGFEPYPLS SYVNATIKGL  480
LESYSEKYTL EERDGALYLG WKNQPLVTSC AWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-631425134375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00856.1_g00007.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018486508.10.0PREDICTED: scarecrow-like protein 5
SwissprotQ8H1250.0SCL5_ARATH; Scarecrow-like protein 5
TrEMBLA0A0D3CPS90.0A0A0D3CPS9_BRAOL; Uncharacterized protein
STRINGBo6g022330.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62128141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0scarecrow-like 5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]