PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00856.1_g00011.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 260aa    MW: 29913.7 Da    PI: 6.2644
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00856.1_g00011.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B390.31.4e-2893187186
                              EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                              f k ltpsdv+k++rlv+pkk+a ++         g++ e  ++++++d+  r+W+++++y+ +s+++v+t+GWk+Fvk+++Lke+
  Rsa1.0_00856.1_g00011.1  93 FRKGLTPSDVGKLNRLVIPKKHAVKYlplieereeGEIVEDVVEVVFYDRGMRQWKFRYCYWTSSQSFVFTSGWKRFVKEKNLKER 178
                              7899**************************9999855666889******************************************* PP

                              -EEEEEE-S CS
                       B3  78 DfvvFkldg 86 
                              D++vF++ +
  Rsa1.0_00856.1_g00011.1 179 DVIVFYRCE 187
                              ******432 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.7E-3386199IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.05E-2791187IPR015300DNA-binding pseudobarrel domain
CDDcd100177.25E-2392191No hitNo description
SMARTSM010196.4E-2193194IPR003340B3 DNA binding domain
PfamPF023621.0E-2593187IPR003340B3 DNA binding domain
PROSITE profilePS5086312.50693204IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MAYDSASLKL RSFDADSHRN FPLNAFTVYE PNFQKGYTTE AVLDMIKEGS YQDRFRDFLS  60
LPFHNVASGI NLVGSKQVRG GGGQDSNTWT ELFRKGLTPS DVGKLNRLVI PKKHAVKYLP  120
LIEEREEGEI VEDVVEVVFY DRGMRQWKFR YCYWTSSQSF VFTSGWKRFV KEKNLKERDV  180
IVFYRCELEG QSKNFLMIDV HCYSGDGSVV IDEEVNESHV HYTSEGEVKT GNDNSSKLKE  240
EETKSVENKA GFMLFGVKIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-279219113108DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00856.1_g00011.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893012e-62AC189301.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB030D08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018465445.11e-161PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
SwissprotQ9C6P51e-112RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A3P5ZAT11e-134A0A3P5ZAT1_BRACM; Uncharacterized protein
TrEMBLM4ENV61e-134M4ENV6_BRARP; Uncharacterized protein
STRINGBra030476.1-P1e-135(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.11e-105RAV family protein