PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00863.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family DBB
Protein Properties Length: 244aa    MW: 27340.1 Da    PI: 5.5382
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00863.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.45e-07443538
                 zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                              C+ +e+ +++  C  ++  lC++C +e+H        H+
  Rsa1.0_00863.1_g00002.1  4 QCDVCENARATVICCADEAALCPKCDVEIHAAnklaskHR 43
                             7*****************************6566777766 PP
2zf-B_box30.19.6e-105586435
                 zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHk 35
                             ++C+ ++ek + +fC +++ llC+dC +++H 
  Rsa1.0_00863.1_g00002.1 55 PRCDICQEKAAFIFCVEDRALLCKDCDESIHV 86
                             79*****************************4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.243147IPR000315B-box-type zinc finger
CDDcd000216.62E-5345No hitNo description
SMARTSM003361.2E-6447IPR000315B-box-type zinc finger
SMARTSM003363.0E-165299IPR000315B-box-type zinc finger
PROSITE profilePS501199.675299IPR000315B-box-type zinc finger
CDDcd000211.23E-75598No hitNo description
PfamPF006431.4E-75595IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MKIQCDVCEN ARATVICCAD EAALCPKCDV EIHAANKLAS KHRRLHLNSF STKFPRCDIC  60
QEKAAFIFCV EDRALLCKDC DESIHVANSR SANHQRFLAT GIKVALSSSS CTKEMEKHHS  120
KEIPAKILSQ QQPSSATTSL PWALDESFTS LSLSSLISFV LTLLYIEQKG QLDLGEFEWF  180
SDMGFFGDQT LPAAEVPELS VSHMGQVHSY KPMKSHVSYK KPRLEIREDD DDDEEEHFIV  240
PDLG
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation (PubMed:17605755, PubMed:18540109, PubMed:21685177). BBX24/STO and BBX25/STH function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX24/STO acts additively with BBX25/STH during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). Functions as negative regulator of photomorphogenic UV-B responses by interacting with both COP1 and HY5 (PubMed:22410790). May act as a transcription factor in the salt-stress response (PubMed:12909688). {ECO:0000269|PubMed:12909688, ECO:0000269|PubMed:17605755, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:21685177, ECO:0000269|PubMed:22410790, ECO:0000269|PubMed:23624715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00863.1_g00002.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak before dawn. {ECO:0000269|PubMed:17605755}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN3869731e-123JN386973.1 Brassica napus salt tolerance protein (STO-2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013716486.11e-142B-box zinc finger protein 24
RefseqXP_022564063.11e-142B-box zinc finger protein 24-like
SwissprotQ962881e-121BBX24_ARATH; B-box zinc finger protein 24
TrEMBLA0A3P5YAQ11e-141A0A3P5YAQ1_BRACM; Uncharacterized protein
STRINGBra032441.1-P1e-140(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27112767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06040.11e-115DBB family protein
Publications ? help Back to Top
  1. Gangappa SN,Holm M,Botto JF
    Molecular interactions of BBX24 and BBX25 with HYH, HY5 HOMOLOG, to modulate Arabidopsis seedling development.
    Plant Signal Behav, 2014.
    [PMID:23733077]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Imtiaz M, et al.
    Identification and functional characterization of the BBX24 promoter and gene from chrysanthemum in Arabidopsis.
    Plant Mol. Biol., 2015. 89(1-2): p. 1-19
    [PMID:26253592]
  4. Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H
    Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains.
    Plant Physiol., 2018. 176(4): p. 2963-2976
    [PMID:29439209]