PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00872.1_g00010.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GeBP
Protein Properties Length: 219aa    MW: 24533.3 Da    PI: 9.5494
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00872.1_g00010.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57394.79.9e-3072159497
                   DUF573   4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkif 89 
                              +r +se+DeivlLqG+id    +gk+p +d   fye vk+sisf+v+ +q+ +Kir L+kK++ k+k    g++ s+ ++h+qk+f
  Rsa1.0_00872.1_g00010.1  72 KRRFSEKDEIVLLQGIIDS---KGKNPLEDKRSFYESVKGSISFDVTLDQFKDKIRYLQKKYTAKEKS---GEQASILNPHEQKCF 151
                              789***************8...9*****************************************9999...*************** PP

                   DUF573  90 elskkiWg 97 
                              +lsk iWg
  Rsa1.0_00872.1_g00010.1 152 QLSKAIWG 159
                              *******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.0E-2572159IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MPITLQPSSP SLSAGENDQH TIFSSDEDEP EDPPPKSSGK AQLSGRKRLS EGMSTNVSSK  60
RANKGEKMGT KKRRFSEKDE IVLLQGIIDS KGKNPLEDKR SFYESVKGSI SFDVTLDQFK  120
DKIRYLQKKY TAKEKSGEQA SILNPHEQKC FQLSKAIWGA VESDESERGL TKKPDLVTPR  180
KGRNNAQEGD MKKKKKSRLV VEKESADWDD ESAFXVACQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00872.1_g00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018480959.11e-135PREDICTED: probable transcription factor At1g66420
TrEMBLA0A397ZSQ52e-76A0A397ZSQ5_BRACM; Uncharacterized protein
STRINGBra028105.1-P3e-72(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66420.12e-30DNA-binding storekeeper protein-related transcriptional regulator