PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00877.1_g00011.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 621aa    MW: 69553.5 Da    PI: 4.717
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00877.1_g00011.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.83.3e-122883651799
                              E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                       B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                              vlp ++  ++ ++++ ++t +l+ ++g  W+vk     ++++ + +++GW++F  +ng  ++Df++F++dg+++f  +v++fr+
  Rsa1.0_00877.1_g00011.1 288 VLPSDYR-QY-YPTPLPQTAVLRKPEGIFWTVKW--AISPEEeISFGDGWSKFIADNGPIDRDFLIFSYDGSRSF--LVSIFRN 365
                              6666664.55.4566899****************..777766699************************998888..****996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142232.8E-1756165No hitNo description
CDDcd100172.31E-11261364No hitNo description
SMARTSM010192.4E-9263366IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-13263365IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.138272366IPR003340B3 DNA binding domain
SuperFamilySSF1019361.86E-14278365IPR015300DNA-binding pseudobarrel domain
PfamPF023627.4E-10288365IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MSENSLSPAS TNETITVHAL LDGYDLADYI DGSTVVPPPT VTMDDGVAPN PAFVLWKRQD  60
KLVYSGLLGA ITPSIQPILS TTDTSAEIWA ILTSTYAKPS RGHILQVKQQ INNWTKGSKS  120
INDYFQGFTT RFDQLAVLGK PMDLEDQIEK ILGGLPDEYK TLLESVPTPI SSAPVTAHYT  180
NHRGSHHSRP NNSRRGGYRG NQTWQQQQQF PAPAHPHSQQ HTPLLQKQAS RFPNKAATYS  240
FFISYHRDLV EVKKMVFTPY PDFLIVYNSQ DLSLSQRLGT SYACSLRVLP SDYRQYYPTP  300
LPQTAVLRKP EGIFWTVKWA ISPEEEISFG DGWSKFIADN GPIDRDFLIF SYDGSRSFLV  360
SIFRNGLPVK PEAPVTIQEI SDDDEEDEAA DNDGEKDGDH DQNMMITSLS LGSSDEEYNA  420
DTTVCEVNKA HGSLKKGSSS QRKRAQPISD DDDDEDETAG DDDDKDEDYD QNMITSLSLG  480
SSDEEYDADT TVCEVNKAHR TLKKGSTSQR IRAQPIGDPE MYLDDPKNPC FIATSSPCRR  540
MLVIAMQVIK DYDLKFDGII KFIDGFGELE GKIGNWKDRV VVYPWQVIYS RNDAKPGDVI  600
ICEILREGDV VRSIKAHFVK K
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00877.1_g00011.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469723.11e-101PREDICTED: B3 domain-containing protein At5g57720-like
SwissprotQ9FHH12e-55Y5772_ARATH; B3 domain-containing protein At5g57720
TrEMBLA0A0D3ALD88e-98A0A0D3ALD8_BRAOL; Uncharacterized protein
TrEMBLA0A3P6CZW51e-97A0A3P6CZW5_BRAOL; Uncharacterized protein
STRINGBo2g029120.11e-98(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137971723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57720.12e-51B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]