PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00878.1_g00011.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 535aa    MW: 59961.6 Da    PI: 4.8403
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00878.1_g00011.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS428.84.2e-1311645353374
                     GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                              + L++cA+a+s+++ e+a ++L+++++++s +gdp qR+aay++e+Laar+a s++ lykal+++e +   s+e+laa+++++ev+
  Rsa1.0_00878.1_g00011.1 164 QMLISCARALSESKPEEALSILNEVRQIVSIQGDPSQRIAAYMVEGLAARMAASGKFLYKALKCKEPP---SDERLAAMQVLFEVC 246
                              79*****************************************************************9...9************** PP

                     GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeel 172
                              P++kf++l+aN aI+ea+ ge+ vHiiDfdi+qG Q+++L+++ a+ p++ p+lR+Tg+++pes+  s   l+ +g rL+++A+  
  Rsa1.0_00878.1_g00011.1 247 PCFKFGFLAANGAIVEAIRGEDDVHIIDFDINQGNQYMTLIRTVAELPGKGPRLRLTGIDDPESVqrSVGGLRIIGLRLEQLAKDH 332
                              ***************************************************************9989999**************** PP

                     GRAS 173 gvpfefnvlvakrledlel..eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
                              gv+fef++ va+++  +++   +L +kpgE+l+Vn+++qlh+++desv++ ++rde+L++vksl+P++v+vveq++++n+ +F+ r
  Rsa1.0_00878.1_g00011.1 333 GVSFEFEA-VASKTCIVSPpsTTLGCKPGETLIVNFAFQLHHMPDESVTTVNQRDELLHMVKSLNPRLVTVVEQDVNTNTCPFFPR 417
                              ********.677777776523689************************************************************** PP

                     GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                              f+ea eyysa+fdsl+ +lpres+er++vEr++l+r+ivnvvaceg+er+er e ++kWr+r+++aGF++ p+s+++++++++l++
  Rsa1.0_00878.1_g00011.1 418 FMEAYEYYSAVFDSLDLTLPRESQERMNVERQCLARDIVNVVACEGEERIERYEVAGKWRARMMMAGFSARPMSSRVTSSIQRLIK 503
                              ************************************************************************************** PP

                     GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              + +   y+v+ee g+l+++W d++L+++SaWr
  Rsa1.0_00878.1_g00011.1 504 QEYCSKYKVKEEVGELLFCWGDKSLIVASAWR 535
                              ***666*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.421136515IPR005202Transcription factor GRAS
PfamPF035141.4E-128164535IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MSLVRSAEPS AATYRNPKLH SLNENAYNSG DTSVEVFVPD RSKNTCLTDP SQSYDKYFLD  60
EFVQQQHPVT SSSFGSLDSF PYQSRPVLGC SMDGFDDEQM RSKIQELERA LLSDEDDQLM  120
EVDNEWSYQN ESEQHHNSSS ADSNSHSSSS KEVVSSSSQA TPKQMLISCA RALSESKPEE  180
ALSILNEVRQ IVSIQGDPSQ RIAAYMVEGL AARMAASGKF LYKALKCKEP PSDERLAAMQ  240
VLFEVCPCFK FGFLAANGAI VEAIRGEDDV HIIDFDINQG NQYMTLIRTV AELPGKGPRL  300
RLTGIDDPES VQRSVGGLRI IGLRLEQLAK DHGVSFEFEA VASKTCIVSP PSTTLGCKPG  360
ETLIVNFAFQ LHHMPDESVT TVNQRDELLH MVKSLNPRLV TVVEQDVNTN TCPFFPRFME  420
AYEYYSAVFD SLDLTLPRES QERMNVERQC LARDIVNVVA CEGEERIERY EVAGKWRARM  480
MMAGFSARPM SSRVTSSIQR LIKQEYCSKY KVKEEVGELL FCWGDKSLIV ASAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-5616953426378Protein SCARECROW
5b3h_A4e-5616953425377Protein SCARECROW
5b3h_D4e-5616953425377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00878.1_g00011.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018435218.10.0PREDICTED: scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLE4MVM40.0E4MVM4_EUTHA; mRNA, clone: RTFL01-01-F16
STRINGXP_006416300.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69532744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]