PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00881.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ARR-B
Protein Properties Length: 385aa    MW: 42586.8 Da    PI: 8.8241
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00881.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like84.21.4e-26191244155
                  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                              k r++W+ eLH++Fv+a+++L G++kA+Pk+ilelm+v+ L++e+v+SHLQkYRl
  Rsa1.0_00881.1_g00001.1 191 KSRVVWSMELHQQFVKAINHL-GIDKAVPKRILELMNVPRLSRENVASHLQKYRL 244
                              68*******************.********************************8 PP
2Response_reg72.12.2e-24131211109
                              EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHH CS
             Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeee 84 
                              vl+vdD+ + + +l+++l +  y +v+ +++++ al+ll+e++  +Dl+l D+ mpgm+G++ll++   e  +lp+i+++  g  +
  Rsa1.0_00881.1_g00001.1  13 VLVVDDDTSCLIILEKMLLRLMY-QVTICSQADVALTLLRERKgcFDLVLSDVHMPGMNGYKLLQQVGLEM-DLPVIMMSVDGRTA 96 
                              89*********************.*******************************************6644.8************* PP

                              HHHHHHHTTESEEEESS--HHHHHH CS
             Response_reg  85 dalealkaGakdflsKpfdpeelvk 109
                              ++   ++ Ga d+l Kp+ peel +
  Rsa1.0_00881.1_g00001.1  97 TVMTGINQGACDYLIKPIRPEELKN 121
                              **********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.37E-3310135IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.3E-3910148No hitNo description
SMARTSM004482.1E-2811123IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011040.7512127IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.2E-2113121IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.09E-2614126No hitNo description
PROSITE profilePS5129410.144188247IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.4E-28188249IPR009057Homeodomain-like
SuperFamilySSF466891.31E-18189248IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-24191244IPR006447Myb domain, plants
PfamPF002492.6E-6193243IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MTISDQFPCG LRVLVVDDDT SCLIILEKML LRLMYQVTIC SQADVALTLL RERKGCFDLV  60
LSDVHMPGMN GYKLLQQVGL EMDLPVIMMS VDGRTATVMT GINQGACDYL IKPIRPEELK  120
NIWQHVVRRK CTVSKEIPKA LDSSSSLESL FSLGGVSEGS VKRRKNKRRV VREAEEEEDD  180
DPLDPGNSSK KSRVVWSMEL HQQFVKAINH LGIDKAVPKR ILELMNVPRL SRENVASHLQ  240
KYRLYLKRLS GAASQSKDAE SMERYENIQA MVSSGQIHPQ ALAALYGRPI DNHMSGGFGV  300
WIPSDSHLAG GNVSSASNRC FGALDSPSSV AASMAIHGLS SSYANLRQQG GGFSNNADYR  360
IRQGNGSGLN EESWILGRPL RQRKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-22188250264ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00098PBMTransfer from AT2G01760Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00881.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018433868.10.0PREDICTED: two-component response regulator ARR14 isoform X1
SwissprotQ8L9Y31e-178ARR14_ARATH; Two-component response regulator ARR14
TrEMBLA0A078JD470.0A0A078JD47_BRANA; Two-component response regulator
STRINGBra026635.1-P0.0(Brassica rapa)
STRINGBo2g134560.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81502736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01760.11e-175response regulator 14