PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00883.1_g00016.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 234aa MW: 26466.8 Da PI: 5.7503

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00883.1_g00016.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	137.6	7.6e-43	5	135	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgy 82 + GfrF Pt++elvv+yL++++egk+ ++++vi+ +di++veP++Lp+ ++++++++w+fF++r++++a+g r++r+t sgy Rsa1.0_00883.1_g00016.1 5 TTGFRFYPTEDELVVFYLRNQLEGKSgDSMHRVIPVLDIFEVEPSHLPNiageRCRGDTEQWFFFVPRQEREARGGRPSRTTGSGY 90 68*********************96667778***********656666666888********************** PP NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 Wkatg+ +v+sk+++ +g+kkt+vfy+g+ap+g kt+W m+ey+ Rsa1.0_00883.1_g00016.1 91 WKATGSPGPVFSKDNRMIGVKKTMVFYTGKAPTGGKTKWKMNEYK 135 ******************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.53E-46	3	161	IPR003441	NAC domain
PROSITE profile	PS51005	46.531	4	161	IPR003441	NAC domain
Pfam	PF02365	8.6E-23	6	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MEDLTTGFRF YPTEDELVVF YLRNQLEGKS GDSMHRVIPV LDIFEVEPSH LPNIAGERCR 60 GDTEQWFFFV PRQEREARGG RPSRTTGSGY WKATGSPGPV FSKDNRMIGV KKTMVFYTGK 120 APTGGKTKWK MNEYKALDDR DNISTIPKLR HEFSLCRVYI TSGSSRAFDR RPVGVLQTGR 180 MLTNDVAVAD TSIFVGSSPE ISMSGGEHVD LSVDTEMVDG LTEPIWEWEQ LNWP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-33	4	166	17	170	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-33	4	166	17	170	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-33	4	166	17	170	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-33	4	166	17	170	NO APICAL MERISTEM PROTEIN
3swm_A	2e-33	4	166	20	173	NAC domain-containing protein 19
3swm_B	2e-33	4	166	20	173	NAC domain-containing protein 19
3swm_C	2e-33	4	166	20	173	NAC domain-containing protein 19
3swm_D	2e-33	4	166	20	173	NAC domain-containing protein 19
3swp_A	2e-33	4	166	20	173	NAC domain-containing protein 19
3swp_B	2e-33	4	166	20	173	NAC domain-containing protein 19
3swp_C	2e-33	4	166	20	173	NAC domain-containing protein 19
3swp_D	2e-33	4	166	20	173	NAC domain-containing protein 19
4dul_A	2e-33	4	166	17	170	NAC domain-containing protein 19
4dul_B	2e-33	4	166	17	170	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00883.1_g00016.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018474504.1	1e-174	PREDICTED: NAC domain-containing protein 90-like
Swissprot	Q9FMR3	1e-144	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A078JT76	1e-165	A0A078JT76_BRANA; BnaCnng60710D protein
TrEMBL	A0A0D3B2A7	1e-165	A0A0D3B2A7_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6ACP5	1e-165	A0A3P6ACP5_BRAOL; Uncharacterized protein
STRING	Bo3g016870.1	1e-165	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1445	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	1e-135	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]