PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00886.1_g00016.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family RAV
Protein Properties Length: 681aa    MW: 75377.5 Da    PI: 8.6299
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00886.1_g00016.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.43e-1264112155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              s++kGV   + +grW A+I++      ++r++lg+f  ++eAa+a++ a+ +++g
  Rsa1.0_00886.1_g00016.1  64 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNQEDEAARAYDVAAHRFRG 112
                              6899**9788.8*********3.....5**********99************998 PP
2B394.38.6e-30191294197
                              EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                              f+k+ tpsdv+k++rlv+pk+ ae+h       + +  +++ l++ed +g++W+++++y+++s++yvltkGW++Fv++++L++gD 
  Rsa1.0_00886.1_g00016.1 191 FEKAVTPSDVGKLNRLVIPKHQAEKHfplpsagDVSVIRGTLLSFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVREKRLCAGDL 276
                              89*************************999886333338899******************************************** PP

                              EEEEE-SSSEE..EEEEE CS
                       B3  80 vvFkldgrsefelvvkvf 97 
                              + Fk+++ ++++l++++ 
  Rsa1.0_00886.1_g00016.1 277 ISFKRSNGQDQQLYIGWK 294
                              ****98778888998885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.25E-2564122No hitNo description
SuperFamilySSF541711.83E-1664120IPR016177DNA-binding domain
PfamPF008471.2E-764112IPR001471AP2/ERF domain
SMARTSM003805.5E-2765126IPR001471AP2/ERF domain
PROSITE profilePS5103220.07365120IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-1965120IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.0E-36184297IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-28189293IPR015300DNA-binding pseudobarrel domain
CDDcd100176.04E-27190284No hitNo description
PfamPF023623.3E-26191295IPR003340B3 DNA binding domain
PROSITE profilePS5086313.451191297IPR003340B3 DNA binding domain
SMARTSM010193.0E-24191297IPR003340B3 DNA binding domain
HamapMF_0197434.624440681IPR002467Peptidase M24A, methionine aminopeptidase, subfamily 1
Gene3DG3DSA:3.90.230.103.0E-79446680IPR000994Peptidase M24, structural domain
TIGRFAMsTIGR005001.2E-69446680IPR002467Peptidase M24A, methionine aminopeptidase, subfamily 1
CDDcd010862.35E-111448679No hitNo description
SuperFamilySSF559201.44E-69448679IPR000994Peptidase M24, structural domain
PfamPF005571.3E-44450672IPR000994Peptidase M24, structural domain
PRINTSPR005991.1E-14505518IPR001714Peptidase M24, methionine aminopeptidase
PRINTSPR005991.1E-14527543IPR001714Peptidase M24, methionine aminopeptidase
PRINTSPR005991.1E-14591603IPR001714Peptidase M24, methionine aminopeptidase
PRINTSPR005991.1E-14623635IPR001714Peptidase M24, methionine aminopeptidase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006508Biological Processproteolysis
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004177Molecular Functionaminopeptidase activity
GO:0008235Molecular Functionmetalloexopeptidase activity
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MDAASSVDES STSTNSVHTP AKTPPAPARK SSSRASLYRM GSGSSVLLDS ENGVEAESRK  60
LPSSRFKGVV PQPNGRWGAQ IYEKHQRVWL GTFNQEDEAA RAYDVAAHRF RGRDAVTNFK  120
AVTTLDNNGD EVDFLNAHSK SEIVDMLRKH TYKEELEQRK RNLHGKGKNT KETAFAAVRV  180
PTGFKTAETL FEKAVTPSDV GKLNRLVIPK HQAEKHFPLP SAGDVSVIRG TLLSFEDVNG  240
KVWRFRYSYW NSSQSYVLTK GWSRFVREKR LCAGDLISFK RSNGQDQQLY IGWKAKSGSD  300
QDTGRVVVRL FGVDITSLKS ENGGVVKEET EMLSLRISPA KMSFGISQSN YLFNGGQLTP  360
SIYFAGAPTN LSSLLVSGKK KKSLFSTRIR RIQELQNTLQ VKRTPPLVCG RVSPRLPVPD  420
HIPKPPYLES TEPPKISSEH QFPDSKGIVK MKAACELAAR VLDYAGTLVK PFVTTDEIDK  480
AVHKMVIESG AYPSPLGYGG FPKSVCTSVN ECMFHGVPDS RQLQDGDIIN IDVAVYLDGY  540
HGDTSRTFLC GDVDESLIQL VKVTEECLEK GMSVCRDGAS FNEVGKIIRY GYNMERFIGH  600
GVGTVLHSEP LIYLDKNYDF EIGYMIEGQT FTLEPILTIG TTEFVTWPDK WTILTADGGP  660
AAQFEHTILI TKSGAETLTT L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4fuk_A7e-724046799305Methionine aminopeptidase
4fuk_B7e-724046799305Methionine aminopeptidase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00886.1_g00016.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481413.10.0PREDICTED: methionine aminopeptidase 1C, chloroplastic/mitochondrial-like
TrEMBLA0A078FKC20.0A0A078FKC2_BRANA; Methionine aminopeptidase
TrEMBLA0A3P5Z6E10.0A0A3P5Z6E1_BRACM; Methionine aminopeptidase
STRINGBra025159.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM439133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25730.11e-163ethylene response DNA binding factor 3