PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00897.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 206aa    MW: 23657.3 Da    PI: 4.5046
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00897.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.53.7e-115699654
                             HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                      HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                              + Er+RR+++N+++  Lr+++P+ +      Kl+Ka+i +  + Y+++L
  Rsa1.0_00897.1_g00002.1 56 VASERKRREKLNQRLLALRSVVPNiS------KLDKASIIRDSITYMQEL 99
                             578*********************66......***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.0125099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.39E-125399No hitNo description
SuperFamilySSF474595.89E-1753121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-95599IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-1656118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-1356105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MEDLDDEYKN YWETTMFFQN QELEFDSWPL EDVFSGSGES SSPDGAATSP VTSKNVASER  60
KRREKLNQRL LALRSVVPNI SKLDKASIIR DSITYMQELI DQEKKLEAEI RELESRSMLL  120
NNPTRDYDCI NNFPGNQQQD LSGIDAMRSK KSRHMDCNTF GTSITRMHNH SPIEVLEANE  180
EEKSTVETKI QTAIAAYNDP NCFINF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-1355109963Transcription factor MYC2
5gnj_B1e-1355109963Transcription factor MYC2
5gnj_E1e-1355109963Transcription factor MYC2
5gnj_F1e-1355109963Transcription factor MYC2
5gnj_G1e-1355109963Transcription factor MYC2
5gnj_I1e-1355109963Transcription factor MYC2
5gnj_M1e-1355109963Transcription factor MYC2
5gnj_N1e-1355109963Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15863ERKRRE
25964RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00897.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018472031.11e-133PREDICTED: transcription factor bHLH27-like isoform X2
SwissprotQ700E31e-87BH027_ARATH; Transcription factor bHLH27
TrEMBLA0A3N6S8Y61e-139A0A3N6S8Y6_BRACR; Uncharacterized protein
STRINGBo1g014720.11e-120(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128411829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29930.14e-92bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]