PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00907.1_g00006.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family AP2
Protein Properties Length: 560aa    MW: 62711.8 Da    PI: 6.5872
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00907.1_g00006.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.54.3e-10262318155
                      AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                              s y+GV++++++gr++A+++d  +       rk  + g ++ +++Aa+a++ a++k+++
  Rsa1.0_00907.1_g00006.1 262 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEDKAARAYDLAALKYWN 318
                              57*******************4444.2344336655.7799999*************97 PP
2AP249.79.1e-16361412155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Rsa1.0_00907.1_g00006.1 361 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 412
                              57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.3E-8262318IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-13262327IPR016177DNA-binding domain
CDDcd000185.63E-17262328No hitNo description
Gene3DG3DSA:3.30.730.101.5E-10263326IPR001471AP2/ERF domain
PROSITE profilePS5103216.766263326IPR001471AP2/ERF domain
SMARTSM003801.2E-17263332IPR001471AP2/ERF domain
PRINTSPR003674.9E-6264275IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-17361421IPR016177DNA-binding domain
PfamPF008473.8E-10361412IPR001471AP2/ERF domain
CDDcd000182.91E-11361420No hitNo description
PROSITE profilePS5103219.111362420IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-18362420IPR001471AP2/ERF domain
SMARTSM003807.9E-31362426IPR001471AP2/ERF domain
PRINTSPR003674.9E-6402422IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MAPMTNWLTF SLSPMEMLRS SDQSQFVSYD ASSAASSSPY LLDNFYGWTN QKPQEFFKEE  60
AQLAASMAES TILTTFVDPQ THSIPKLEDF LGGDLRYSDN SQSETQDSSS LSQIYDPRHH  120
LNQNQNQNQT GFYSDNNDFK TMPGFQTAFS TNSGSEVDDS ASIARTHLPG EYLGHVVESS  180
GPELGFHGGA LSLGDSINNA NQRSNDTNQI TEHHHYQVNN ERINNINSSE KRDSEKEKPV  240
VAVETSDCSN KKVADTFGQR TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ ARKGRQGGYD  300
KEDKAARAYD LAALKYWNAA ATTNFPITNY SKELEEMKHM TKLEFIASLR RKSSGFSRGA  360
SIYRGVTRHH QQGRWQARIG RVAGNKDLYL GTFATEEEAA EAYDIAAIKF RGINAVTNFE  420
MNRYDVEAIM KSALPIGGAA KRLKLSLEAS ASAEQKPIIS HHHQQQLHHL QSSPNNSSIN  480
FALCPTNSAV ESQMVPCGIP FDVATLYHHQ QQQQQQNFFQ HFQASDSTGS SNNNNSNVQG  540
SMGLLAPNQA EFFLWPNQSY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00907.1_g00006.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9741970.0AY974197.1 Arabidopsis thaliana clone At5g10510 AP2/EREBP transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018445689.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 isoform X1
SwissprotQ52QU20.0AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A3P6DCR60.0A0A3P6DCR6_BRACM; Uncharacterized protein
STRINGBra009026.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33332765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.20.0AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]