PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00907.1_g00010.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 326aa    MW: 36809.5 Da    PI: 4.5127
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00907.1_g00010.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.5e-10149206654
                              HHHHHHHHHHHHHHHHHHHCTSCC.C...........TTS-STCHHHHHHHHHHHHHH CS
                      HLH   6 nerErrRRdriNsafeeLrellPk.as........kapskKlsKaeiLekAveYIksL 54 
                               ++ErrRR+r+N++++ Lr++     +         + + K++  +iL  A++Y+k+L
  Rsa1.0_00907.1_g00010.1 149 LMAERRRRKRLNDRLSMLRSISTYmYVlflldpssTQFNDKMDRTSILGDAIDYMKEL 206
                              589*****************9999666********9********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.786143206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-11146215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-7149212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-10149215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-7150206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MDMEWTQMST QESNVNLDGN NIDFFPSGRN LEYLCFNNPL QEDDNNIDHT FSSLMDLISQ  60
PPPLLLHQPP QPSSSPTPLF SSSFEYPFLE TLQDVMESPY YPPLEVSASQ EGNSNDNSSP  120
LMEESKSFMR ETNKKKRNRN VVGQPSKNLM AERRRRKRLN DRLSMLRSIS TYMYVLFLLD  180
PSSTQFNDKM DRTSILGDAI DYMKELLEKI NKLKELGSNS DLKDSLTTDQ SMVRNSPKFE  240
VDQREVNTHI DICCSTKPGL LLSTVGTLEI NLGLEIQQCV ISCFGDFSLQ ASCSEVAGQR  300
DCITSEDIKQ ALLKNAGSEL GLGVRV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134156KKRNRNVVGQPSKNLMAERRRRK
2151158ERRRRKRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00907.1_g00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444342.10.0PREDICTED: transcription factor bHLH61
SwissprotQ9LXA91e-105BH061_ARATH; Transcription factor bHLH61
TrEMBLA0A397XW201e-155A0A397XW20_BRACM; Uncharacterized protein
STRINGBra009022.1-P1e-154(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20432878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10570.12e-93bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]