PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00910.1_g00013.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 259aa    MW: 29128.7 Da    PI: 9.9829
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00910.1_g00013.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.61.1e-1319113198
                              EEEE-..-HHHHTT-E.E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE CS
                       B3   1 ffkvltpsdvlksgrl.vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkl 84 
                              ffk+l  +d ++++++  +p++f ++ + k + + ++tl+  +g sW+v+l  +   g y+++ kGWk+F ++n+L + +f++F+ 
  Rsa1.0_00910.1_g00013.1  19 FFKILADEDLSSESMVrLIPNDFWTRSECK-NLPPKVTLKVAWGSSWTVNL--STFMGFYLMErKGWKKFLSDNHLGDDEFLTFTN 101
                              899999999988876658999999777544.56779***************..888888655549********************6 PP

                              -SSSEE..EEEEE- CS
                       B3  85 dgrsefelvvkvfr 98 
                              +g+++   +v +++
  Rsa1.0_00910.1_g00013.1 102 QGNNCI--TVDIYQ 113
                              665555..666665 PP
2B348.41.7e-151752541196
                              HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                       B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                              + + +l++p +fa+eh+ k  +  + ++ d++g+ W+v++    +  + ++++GW+  +k  gL +gD ++F+l++   +e+v+ v
  Rsa1.0_00910.1_g00013.1 175 SHLTLLIIPLDFANEHMPK--GRAKFVIHDPKGKPWDVTY--VPSNASKLFSSGWRILAKGYGLAVGDLCTFRLVK--PKEMVLEV 254
                              445679**********733..6679***************..88888899***********************986..44456555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-1415116IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.2E-1515116IPR015300DNA-binding pseudobarrel domain
CDDcd100171.38E-1118112No hitNo description
PfamPF023621.1E-1119113IPR003340B3 DNA binding domain
SMARTSM010191.7E-1019115IPR003340B3 DNA binding domain
PROSITE profilePS5086311.30720115IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-19159256IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-20161256IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.197165258IPR003340B3 DNA binding domain
CDDcd100171.85E-14166255No hitNo description
SMARTSM010192.1E-14168258IPR003340B3 DNA binding domain
PfamPF023621.8E-12174252IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MARNRALGRL QEDMNKTSFF KILADEDLSS ESMVRLIPND FWTRSECKNL PPKVTLKVAW  60
GSSWTVNLST FMGFYLMERK GWKKFLSDNH LGDDEFLTFT NQGNNCITVD IYQKNCIEIL  120
KPLNTSSSNA KNEKMSCVDP VIAESKMKKK VVSNVNRASS SSSSAPTFSL TIKKSHLTLL  180
IIPLDFANEH MPKGRAKFVI HDPKGKPWDV TYVPSNASKL FSSGWRILAK GYGLAVGDLC  240
TFRLVKPKEM VLEVLHASP
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00910.1_g00013.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018482866.10.0PREDICTED: B3 domain-containing protein At5g18090-like isoform X1
RefseqXP_018482869.10.0PREDICTED: B3 domain-containing protein At5g18090-like isoform X4
RefseqXP_018482870.10.0PREDICTED: B3 domain-containing protein At5g18090-like isoform X4
RefseqXP_018482871.10.0PREDICTED: B3 domain-containing protein At5g18090-like isoform X4
TrEMBLA0A078H0V81e-154A0A078H0V8_BRANA; BnaA04g25590D protein
STRINGBra037663.1-P1e-151(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35310.16e-48B3 family protein