PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00915.1_g00009.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

FAR1

Protein Properties

Length: 203aa MW: 23442.7 Da PI: 10.5402

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00915.1_g00009.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	95.3	7.4e-30	30	120	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY++YA+++GF +r+++ ++s +++g++++r++vC+keg+r+++ +++e++r++ra tr gCka ++vkkek+gkw vtk+++eH Rsa1.0_00915.1_g00009.1 30 SFYDNYATRTGFVMRVDAFRRStRDDGTVVWRRLVCNKEGFRRSRPRRDESRRKPRAITREGCKALIVVKKEKSGKWIVTKFVKEH 115 5***************999978899******************************************************* PP FAR1 86 nHela 90 nH+l Rsa1.0_00915.1_g00009.1 116 NHPLL 120 *96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.5E-28	30	120	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MMENTVTGEA SSAVEPFIGM DFESEEAAKS FYDNYATRTG FVMRVDAFRR STRDDGTVVW 60 RRLVCNKEGF RRSRPRRDES RRKPRAITRE GCKALIVVKK EKSGKWIVTK FVKEHNHPLL 120 SLLTNNGRRS SQISQTPDKK DAKIRELSTE LSRERKRCAA LQQQLDMVLN VMEEHSNHLS 180 ININNVIQNV REIESNTFTK PPS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	70	77	RRSRPRRD

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00915.1_g00009.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018489049.1	1e-138	PREDICTED: protein FAR1-RELATED SEQUENCE 7
Swissprot	Q9SZL8	3e-27	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A397ZFM9	1e-121	A0A397ZFM9_BRACM; Uncharacterized protein
STRING	Bo5g141470.1	1e-114	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13524	22	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	1e-104	FAR1 family protein

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]