PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00923.1_g00016.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 385aa    MW: 43827.7 Da    PI: 6.4214
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00923.1_g00016.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.92.8e-09321376147
                              TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqky 47 
                              r+ WT+eE+e l+ +vk++  +      W++I ++      ++Rt+ ++k++w++ 
  Rsa1.0_00923.1_g00016.1 321 RLFWTPEEEEMLKVGVKKFSAEakknmPWRKILEMGEkvfhETRTPADLKDKWRNM 376
                              678*****************************99877*****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579032.64E-687140IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.109.1E-588134IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd154892.31E-589134No hitNo description
PROSITE profilePS500908.165316377IPR017877Myb-like domain
SuperFamilySSF466894.79E-10319377IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-9320377IPR009057Homeodomain-like
SMARTSM007172.2E-4320379IPR001005SANT/Myb domain
CDDcd116602.02E-10324377No hitNo description
PfamPF002492.7E-6324376IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MRSKSFAARS RPHRASRNSL DPYPSSPASL PGEANERFAC GVSTNAHCDS GEAADVEIVP  60
DSFDERDVPS KKRHCLETTR GGRLNLEACI VCDVSDEWVS RCSGTDCFIW FHGKCLNPEL  120
SSSEDLAKTY CPYCWLRVLM IKHESVTVRE KAVGAENEER KSKDRSVDRT DVVRDQELRG  180
GNGVCSSEKE QLQMEKDSDQ SREDNMPLTE ETDGQPQEDI EKFQDAEEDK VDEKTTSDQT  240
RGARGKGDVS GKEQDQIQQN ERPRRQLILS DSEISSDEST KETSPSGTMK NQQRKHSSTS  300
KVVKPTTLRD TTYFKRDQRK RLFWTPEEEE MLKVGVKKFS AEAKKNMPWR KILEMGEKVF  360
HETRTPADLK DKWRNMMGGR GKKTN
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00923.1_g00016.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937354e-52AB493735.1 Arabidopsis thaliana At5g03780 mRNA for hypothetical protein, partial cds, clone: RAAt5g03780.
GenBankAK1178774e-52AK117877.1 Arabidopsis thaliana At5g03780 mRNA for myb like protein, complete cds, clone: RAFL19-05-H14.
GenBankAY5195434e-52AY519543.1 Arabidopsis thaliana MYB transcription factor (At5g03780) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018483319.10.0PREDICTED: trichohyalin-like
TrEMBLA0A397Z3020.0A0A397Z302_BRACM; Uncharacterized protein
STRINGBra037494.1-P1e-152(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76601327
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.23e-08MYB_related family protein