PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00924.1_g00002.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NF-YC

Protein Properties

Length: 155aa MW: 17920.6 Da PI: 6.0815

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00924.1_g00002.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	64.7	1.7e-20	28	80	1	53
NF-YC 1 qlksfwekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacel 53 qlk+fw +q++ ++dfk h+lPla+ikki+ka + v+mis+e+ ++++kace+ Rsa1.0_00924.1_g00002.1 28 QLKNFWYQQVQAVEDFKTHQLPLAQIKKIIKAGPSVHMISTETTIVFTKACEI 80 89**************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	4.82E-10	23	80	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.2E-13	40	80	IPR009072	Histone-fold
Pfam	PF00808	6.2E-5	47	79	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
MENNEISMPN HQPQTTTFNP VLQERNDQLK NFWYQQVQAV EDFKTHQLPL AQIKKIIKAG 60 PSVHMISTET TIVFTKACEI NRISQPQWLT LSPLTFLSTF LDVVPRVESL NANPANMFLP 120 HPENAMQYFY LPVMDGSGMY SPQLWPSPWP AFNLW

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00924.1_g00002.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006402087.1	4e-39	nuclear transcription factor Y subunit C-6
TrEMBL	V4KZY0	9e-38	V4KZY0_EUTSA; Uncharacterized protein
STRING	XP_006402087.1	2e-38	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM478	28	160

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50480.1	2e-28	nuclear factor Y, subunit C6