PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00929.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family SRS
Protein Properties Length: 343aa    MW: 36215.7 Da    PI: 7.832
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00929.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702220.82.9e-681302754154
                   DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsst 89 
                              g+ sCqdCGnqakkdCah+RCRtCCksrg++C thvkstWvpaakrrerqqqla++++ +   a+e+ +kr+re+         st
  Rsa1.0_00929.1_g00001.1 130 GGPSCQDCGNQAKKDCAHMRCRTCCKSRGLECPTHVKSTWVPAAKRRERQQQLASSQQLQ--GASESVPKRPREHFPIP---PRST 210
                              6779*************************************************9986665..55889999999984443...4444 PP

                   DUF702  90 klssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                              +l+ +  ++ l++ ++P+e+ss+a+f+cvrvssvd+ge+e+aY+tavsigGh+fkGiLydqG++e
  Rsa1.0_00929.1_g00001.1 211 SLVCTRDTSGLQVGNFPPEISSSAIFQCVRVSSVDEGEDEYAYKTAVSIGGHIFKGILYDQGPAE 275
                              45555566789999************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.1E-63131274IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016233.1E-27133175IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.8E-25226273IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MAGFFSLGNG IGVDGGGSRQ DTTTTNSNNN PSPSGNESWL WCRNPNSNTN ANANANTGCG  60
DIAPSYKGTL ELWQHPNNQQ IIFQQQQQQR LDLYTSAAGL GVGPSNRSLI ETSGGGASAL  120
MMMRSGDGGG GPSCQDCGNQ AKKDCAHMRC RTCCKSRGLE CPTHVKSTWV PAAKRRERQQ  180
QLASSQQLQG ASESVPKRPR EHFPIPPRST SLVCTRDTSG LQVGNFPPEI SSSAIFQCVR  240
VSSVDEGEDE YAYKTAVSIG GHIFKGILYD QGPAERSSSG GGSQPLNLIT AGPSASSSSA  300
NVSCNNGVAG STSDHYIDPG SLNYPTPNNS FITGTHFFSN PRS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269|PubMed:10368174, ECO:0000269|PubMed:11706176, ECO:0000269|PubMed:16740146}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00929.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018439228.10.0PREDICTED: protein SHORT INTERNODES
SwissprotQ9XGX01e-174SHI_ARATH; Protein SHORT INTERNODES
TrEMBLA0A078GWD70.0A0A078GWD7_BRANA; BnaC07g16800D protein
TrEMBLA0A3P6E0H40.0A0A3P6E0H4_BRAOL; Uncharacterized protein
STRINGBo7g065040.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34192864
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.11e-140Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Islam MA, et al.
    Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants.
    PLoS ONE, 2013. 8(1): p. e53377
    [PMID:23308204]
  2. Pfannebecker KC,Lange M,Rupp O,Becker A
    An Evolutionary Framework for Carpel Developmental Control Genes.
    Mol. Biol. Evol., 2017. 34(2): p. 330-348
    [PMID:28049761]
  3. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]