PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00933.1_g00008.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 248aa    MW: 27511.4 Da    PI: 4.9611
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00933.1_g00008.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.24.7e-11182227655
                              HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +++Er RR ri +++ +L+el+P+     +k  + a++L +A +Y+k Lq
  Rsa1.0_00933.1_g00008.1 182 SIAERVRRTRISDRIRRLQELVPNM----DKQTNTADMLDEALQYVKALQ 227
                              689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.284176226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-16179242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.40E-10180231No hitNo description
Gene3DG3DSA:4.10.280.104.8E-15181240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-8182227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-11182232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MQSTHDDDGG GGKGGGGDEV SRSGLSRIRS APATWIETLL QDEEEEDDLK PDLCLTELLT  60
GNSSGTTSRD SFEFPGAAVE QGLMYNHQVG FHRQNSSPAD FLSGSAASGS DGFFSNFGIP  120
ANYEYVPPNV DISPASKRSR EFSSHFKEEQ MSGGMMEDNK LLEDSVPFRV RAKRGCATHP  180
RSIAERVRRT RISDRIRRLQ ELVPNMDKQT NTADMLDEAL QYVKALQSQI QELTEQQKRC  240
SCKPKEEK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11016GGKGGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00933.1_g00008.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4117914e-85AF411791.1 Arabidopsis thaliana At1g35460/F12A4_2 mRNA, complete cds.
GenBankAF4886124e-85AF488612.1 Arabidopsis thaliana clone bHLH080 putative bHLH transcription factor mRNA, complete cds.
GenBankAY0937944e-85AY093794.1 Arabidopsis thaliana At1g35460/F12A4_2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018487262.11e-171PREDICTED: transcription factor bHLH80-like
SwissprotQ9C8P81e-114BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A078GPB61e-134A0A078GPB6_BRANA; BnaA05g18250D protein
TrEMBLA0A397ZBJ41e-134A0A397ZBJ4_BRACM; Uncharacterized protein
TrEMBLM4F0281e-134M4F028_BRARP; Uncharacterized protein
STRINGBra034421.1-P1e-134(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51042551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.15e-85bHLH family protein