PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00936.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 722aa    MW: 82163 Da    PI: 5.7439
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00936.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3366.5e-1033417192373
                     GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvs..elykalppsetseknsseelaalklfs 85 
                              ++lL+ cA+ +s+gd+  a+ lL +++++++p gd+ qRla +f++AL+arl +s+s  ++ +   + ++++++ ++ l+++++f 
  Rsa1.0_00936.1_g00003.1 341 RTLLTLCAQSISAGDKITADDLLRQIRKQCTPLGDASQRLAYFFANALQARLEGSCSgaTIQSYYDSIASKKRTAAQILKSYHVFL 426
                              6799**************************************************65511566666888888888************ PP

                     GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfA 169
                                sP++++ ++  N++Il+a++ ++ +H+iDf+i +G+QWp ++q  ++ ++gp +lRiTgv+ p++g   +e++e tg+rL++++
  Rsa1.0_00936.1_g00003.1 427 SSSPFMTLIYFYSNKMILDAAKDASVLHVIDFGILYGFQWPMFIQHVSKSKNGPKKLRITGVELPQNGfrPTERIEDTGRRLTEYC 512
                              *******************************************************************9****************** PP

                     GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesF 253
                              +++gvpfe+n++++k++e+++lee++++p+E+laVn +l+l++l d +   e+  +rd +Lkl+++++P+v+  +  + + n++ F
  Rsa1.0_00936.1_g00003.1 513 KRFGVPFEYNAIASKNWETIRLEEFKIRPDEVLAVNTALRLKNLRDVTPGGEEdcPRDGFLKLIRDMKPDVFLSSTVNGSFNAPFF 598
                              ************99*******************************99988777789****************************** PP

                     GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339
                               +rf eal +ys+l+d++ ++l++e+ eri  E e+ gre++nv+aceg +r+er et+++W+ r+ +aGFk+ p++ + +++ + 
  Rsa1.0_00936.1_g00003.1 599 TTRFKEALFHYSSLLDMFGSTLSKENPERIHFEGEFYGREVMNVIACEGVDRVERPETYKQWQVRMVRAGFKQKPVEAELVESFRV 684
                              ************************************************************************************** PP

                     GRAS 340 llrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                               ++k +  + + ++e+s+++++gWk+r L+s S+W
  Rsa1.0_00936.1_g00003.1 685 KMKKWGyHKDFVLDEDSNWFLQGWKGRILFSSSCW 719
                              ***9999999************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.651314699IPR005202Transcription factor GRAS
PfamPF035142.3E-100341719IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 722 aa     Download sequence    Send to blast
MNSNFSGVVN GFEYYDVGFL PNQNPNLGFG VPSSSDFDLR LDHHHQPSIW VPATQQVQDF  60
DIHHYHQQQQ QKYSPPADEI DSENTLLKYV NQLLMEEETL ADAEQTTLFY DSLALRQTEQ  120
MLQQVISDSH AQSPCAIHPN SITSSCCSST TTTTGGGSGN YWSSNSNSSI GFETAGNSTE  180
YYDDAVRDTV SFQGPNTFRG GFVQPASEIL VRSMFTDTDS VMQFKKGLEE ASKFLPNTDQ  240
WIFNHDQHEV KEDRVISRAR RKNRHHEEEE EDLEEARSSK QSAVTVEEDG KLTELFDKVL  300
LLDGESDPHV IEDGESVSSK PQVPKKEGGR TKRKSQAFDF RTLLTLCAQS ISAGDKITAD  360
DLLRQIRKQC TPLGDASQRL AYFFANALQA RLEGSCSGAT IQSYYDSIAS KKRTAAQILK  420
SYHVFLSSSP FMTLIYFYSN KMILDAAKDA SVLHVIDFGI LYGFQWPMFI QHVSKSKNGP  480
KKLRITGVEL PQNGFRPTER IEDTGRRLTE YCKRFGVPFE YNAIASKNWE TIRLEEFKIR  540
PDEVLAVNTA LRLKNLRDVT PGGEEDCPRD GFLKLIRDMK PDVFLSSTVN GSFNAPFFTT  600
RFKEALFHYS SLLDMFGSTL SKENPERIHF EGEFYGREVM NVIACEGVDR VERPETYKQW  660
QVRMVRAGFK QKPVEAELVE SFRVKMKKWG YHKDFVLDED SNWFLQGWKG RILFSSSCWV  720
PS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-423247212379Protein SCARECROW
5b3h_D2e-423247212379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00936.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481527.10.0PREDICTED: scarecrow-like protein 31
SwissprotQ3EDH00.0SCL31_ARATH; Scarecrow-like protein 31
TrEMBLA0A3P6EC180.0A0A3P6EC18_BRAOL; Uncharacterized protein
STRINGBo5g008260.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135111728
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07520.10.0GRAS family protein