PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00936.1_g00006.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 612aa    MW: 68419.5 Da    PI: 10.0682
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00936.1_g00006.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.65.1e-07510559147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                              r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Rsa1.0_00936.1_g00006.1 510 RRPFSVAEVEVLVQAVERLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 559
                              6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.735505564IPR017930Myb domain
SMARTSM007173.7E-6509562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-9510560IPR009057Homeodomain-like
CDDcd116601.42E-15511561No hitNo description
SuperFamilySSF466893.14E-15511592IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MVLQKRLDYG FNGYEVPPTP RATRSPRKSA FKKNQISSFD LLAAVAGDLL LESGGHSSSS  60
SNNAIGDTNE EDHCAVKTEP IYGGHQTVVE ETNCDHIHNN NAERRFFVSE ILPKSQRSPT  120
PPKDFHFGST SGITSDSSEK LGTQELGQSV RFRSETNDKI SSMHERIINN CEPELSRDVI  180
AENKHHIGSD FKKPIPRSVC SDDIELLNGD GENFSARYAT KTFRSTLRIG DRRIKKVLAS  240
KYCKVSSKQK ETTVTDTDLD LKPGYYSKKP CFKSLRSERR YPIKKRRYFD GYTASQSEAA  300
VRNEGLSGSP RKASAFMSTI ACQKQPPLQS RDSHVKLGIK SFRVPEIFID IPETATVGSL  360
KRTVLEAVTT ILEGGLRIGV LVHGKKVRDD NKMLLQSGIS LDTLSDTLGF CLEPNPPQST  420
KQLSPEDSDF VRPYNNVPHT LTRCLPSQGK HAKPSNSVDS DLDSKPSAPN RGKPVYSRAL  480
IPVAPLHAQA LNVVPPRKPK RSEVAQRRIR RPFSVAEVEV LVQAVERLGT GRWRDVKLRA  540
FDNAKHRTYV DLKDKWKTLV HTARISPQQR RGEPVPQELL DRVLMAHAYW SQQQGKQQLL  600
EGPHKLETSL GL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A1e-564975994106Telomere binding protein TBP1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00936.1_g00006.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195350.0AY519535.1 Arabidopsis thaliana MYB transcription factor (At1g07540) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018482964.10.0PREDICTED: telomere repeat-binding protein 5-like
SwissprotQ6R0E30.0TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A3P6CX630.0A0A3P6CX63_BRACM; Uncharacterized protein
STRINGBo5g008270.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32402539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.10.0TRF-like 2