PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00939.1_g00015.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 444aa MW: 51080.8 Da PI: 9.0497

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00939.1_g00015.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.6	2.2e-08	159	206	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR +iN+++ L++++P + k + a++L + ++Y++sLq Rsa1.0_00939.1_g00015.1 159 SHSLAERVRRGKINERLKCLQDIVPGC----YKAMGMATMLDEIINYVQSLQ 206 8***********************8....355999***********99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.58E-16	153	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.74E-8	153	210	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.0E-16	155	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.389	155	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.6E-6	159	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.7E-9	161	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF13456	2.0E-7	295	414	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence Send to blast
MANLSSDLQT YTVDDPITQL AELNNTLHQF QTMFAPPFSS SLESLLFHHH QHQPLPDHFL 60 GKSPENNFHQ GVFVPSNIHN KNDESSSRVD TKKRKTLMAS MSTSENSVSD QTSSAQVCIN 120 GNVLTKNSSS RRGKRSKNRE EREREVVHVR AKRGQATDSH SLAERVRRGK INERLKCLQD 180 IVPGCYKAMG MATMLDEIIN YVQSLQNQVE FLSMKLTAAS SYYDFNSEAD AVDSMQYNGR 240 RWDPVDIQGK AKADAEEWFL AQVGEEEITK EKRTVEIQRK RRWSPPMEGW LMCNVGFEWN 300 QRSKVLGVAW VVRNHRGVVL LHSRRAFSNI LSLEDARFET ILWAAESMTS LRYNKMVFSG 360 DFKELFLAIK KPHQWPRLAF QVEELSGKLR LMEEHQLKYV TVEENRGATI IAQSVTRQGR 420 VRSYVATGHP EWLFELFVNE SRLL

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence Send to blast

MANLSSDLQT YTVDDPITQL AELNNTLHQF QTMFAPPFSS SLESLLFHHH QHQPLPDHFL  60
GKSPENNFHQ GVFVPSNIHN KNDESSSRVD TKKRKTLMAS MSTSENSVSD QTSSAQVCIN  120
GNVLTKNSSS RRGKRSKNRE EREREVVHVR AKRGQATDSH SLAERVRRGK INERLKCLQD  180
IVPGCYKAMG MATMLDEIIN YVQSLQNQVE FLSMKLTAAS SYYDFNSEAD AVDSMQYNGR  240
RWDPVDIQGK AKADAEEWFL AQVGEEEITK EKRTVEIQRK RRWSPPMEGW LMCNVGFEWN  300
QRSKVLGVAW VVRNHRGVVL LHSRRAFSNI LSLEDARFET ILWAAESMTS LRYNKMVFSG  360
DFKELFLAIK KPHQWPRLAF QVEELSGKLR LMEEHQLKYV TVEENRGATI IAQSVTRQGR  420
VRSYVATGHP EWLFELFVNE SRLL

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator of brassinosteroid signaling. {ECO:0000269\|PubMed:12454087}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00939.1_g00015.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269\|PubMed:12454087}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018454690.1	1e-169	PREDICTED: transcription factor BEE 3
Swissprot	Q8GWK7	1e-124	BEE3_ARATH; Transcription factor BEE 3
TrEMBL	A0A3P6BXV5	1e-160	A0A3P6BXV5_BRACM; Uncharacterized protein
TrEMBL	M4DHI3	1e-160	M4DHI3_BRARP; Uncharacterized protein
STRING	Bra015960.1-P	1e-161	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2997	27	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73830.2	3e-98	BR enhanced expression 3

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]