PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00944.1_g00011.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family BBR-BPC
Protein Properties Length: 277aa    MW: 31070.2 Da    PI: 9.8951
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00944.1_g00011.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind61.92.8e-191113195
                GAGA_bind   1 mdddgsre..rnkg.yye.................paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdka 66 
                              m++ g+++  r k+ y++                 ++++l   +++++ms++aerd++++ern a+++kk+a+a+rd+a+ qrd a
  Rsa1.0_00944.1_g00011.1   1 MESGGQYDngRYKPdYFKgtppsvwnimpqhqikeQHNALV--MNKKIMSILAERDSALKERNEAVAAKKEALAARDEALEQRDRA 84 
                              888999888999999999**********9887764446666..99***************************************** PP

                GAGA_bind  67 laernkalverdnkllalllvenslasal 95 
                              l+er++a++er+ +l al + en+l+++ 
  Rsa1.0_00944.1_g00011.1  85 LSERDNAIMERETALNALHYPENNLNHHI 113
                              ***********************998764 PP
2GAGA_bind251.45.6e-77134277156301
                GAGA_bind 156 akkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSv 241
                              ++++k +k+kk+ k++++ ++ v++++  ++ +++++  d++ln  ++De+++PvPvC+CtG+ rqCYkWG+GGWqS+CCttt+S+
  Rsa1.0_00944.1_g00011.1 134 PADKKPTKRKKESKQGKDLNRLVASPG--KKCRKDWDVNDVGLNLLAFDETSMPVPVCTCTGTARQCYKWGSGGWQSSCCTTTLSQ 217
                              455666677777777888888899998..57******************************************************* PP

                GAGA_bind 242 yPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                              +PLP+++++r++R++grKmS+++f++lL++La+eG+dls pvDLkd+WA+HGtn+++ti+
  Rsa1.0_00944.1_g00011.1 218 HPLPQMPNKRHSRMGGRKMSGNVFSRLLSRLAGEGHDLSSPVDLKDYWARHGTNRYITIK 277
                              ***********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012262.2E-1391277IPR010409GAGA-binding transcriptional activator
PfamPF062172.8E-8318277IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MESGGQYDNG RYKPDYFKGT PPSVWNIMPQ HQIKEQHNAL VMNKKIMSIL AERDSALKER  60
NEAVAAKKEA LAARDEALEQ RDRALSERDN AIMERETALN ALHYPENNLN HHILSRGGNE  120
GTHLPNPSPP STIPADKKPT KRKKESKQGK DLNRLVASPG KKCRKDWDVN DVGLNLLAFD  180
ETSMPVPVCT CTGTARQCYK WGSGGWQSSC CTTTLSQHPL PQMPNKRHSR MGGRKMSGNV  240
FSRLLSRLAG EGHDLSSPVD LKDYWARHGT NRYITIK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00480DAPTransfer from AT4G38910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00944.1_g00011.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018447695.10.0PREDICTED: protein BASIC PENTACYSTEINE5-like
RefseqXP_018447854.10.0PREDICTED: protein BASIC PENTACYSTEINE5-like
SwissprotF4JUI31e-158BPC5_ARATH; Protein BASIC PENTACYSTEINE5
TrEMBLA0A3P6C5P11e-176A0A3P6C5P1_BRACM; Uncharacterized protein
STRINGXP_006411681.11e-173(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40902659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38910.21e-146basic pentacysteine 5