PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00948.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WOX
Protein Properties Length: 393aa    MW: 43655 Da    PI: 8.4782
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00948.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.69.3e-1853113257
                              T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                 Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                              ++R+++++eq+++Le+ F++   +p +ee++++ ++l    ++ +++V++WFqNr+ + k+
  Rsa1.0_00948.1_g00003.1  53 KPRWNPKPEQIRILEAIFNSgLVNPPREEIRRIRAQLqeygQVGDANVFYWFQNRKSRSKH 113
                              89*****************99*************************************995 PP
2Wus_type_Homeobox110.97.2e-3652114264
        Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                              +++RW+P+peQi+iLe++++sGl++P++eei+ri+a+L+eyG+++d+NVfyWFQNrk+R+++k
  Rsa1.0_00948.1_g00003.1  52 PKPRWNPKPEQIRILEAIFNSGLVNPPREEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 114
                              689**********************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.2E-742112IPR009057Homeodomain-like
PROSITE profilePS5007110.54449114IPR001356Homeobox domain
SuperFamilySSF466898.98E-1250117IPR009057Homeodomain-like
SMARTSM003898.0E-851118IPR001356Homeobox domain
CDDcd000868.73E-852114No hitNo description
PfamPF000462.1E-1553113IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010075Biological Processregulation of meristem growth
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MASSNRHWPS MFKSKPHHHQ WQHDINSPLL PSPASHRSSP FSGCEVERSP EPKPRWNPKP  60
EQIRILEAIF NSGLVNPPRE EIRRIRAQLQ EYGQVGDANV FYWFQNRKSR SKHKLRLLHN  120
HSKHSLPPPQ PQPQPQPISS ASSSSSSSSS SSKSTKPRKS KNKNNNNTNL SLGGSQMMGM  180
FPPEASFLFP TSSVGGFEGI PVSSQLGFFP GDMIEQPKQT PPTAGPCTGI LLSEIMNASA  240
GYETHNHQQL SEKEDEEMRL KMLQQPQPQI CYAATSDQIN SYNNNNNNIM LHVPPTTSTT  300
TTSNPLAIVP STLDQLQVQA GARIRVFINE MEFEVSPGQF NVRDAFGEEV VLINSAGQPI  360
VTDEYGVAIH PLQHGASYYL VLFPLLSSLF SSN
Functional Description ? help Back to Top
Source Description
UniProtHomeodomain transcription factor required for meristem growth and early development (PubMed:15753038). Promotes cell proliferation and prevents premature differentiation in meristematic tissues during postembryonic development (PubMed:15753038). Essential for maintaining tissue growth during embryogenesis (PubMed:17706632). May act by repressing TSS to promote meristematic proliferation (PubMed:21185286). Involved in the transcriptional activation of a subset of cytokinin response factors (PubMed:20110319). May act as a negative regulator of cytokinin signaling in the dark (PubMed:21057190). {ECO:0000269|PubMed:15753038, ECO:0000269|PubMed:17706632, ECO:0000269|PubMed:20110319, ECO:0000269|PubMed:21057190, ECO:0000303|PubMed:21185286}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00948.1_g00003.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in the zygote after fertilization by the transcription factor WRKY2. {ECO:0000269|PubMed:21316593}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018438234.10.0PREDICTED: WUSCHEL-related homeobox 9-like
SwissprotQ6X7J40.0WOX9_ARATH; WUSCHEL-related homeobox 9
TrEMBLA0A078FWA30.0A0A078FWA3_BRANA; BnaA05g09770D protein
TrEMBLA0A3P5ZBW90.0A0A3P5ZBW9_BRACM; Uncharacterized protein
TrEMBLM4CMM60.0M4CMM6_BRARP; Uncharacterized protein
STRINGBra005464.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72062640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.11e-177homeobox-3
Publications ? help Back to Top
  1. Wang W, et al.
    Dwarf Tiller1, a Wuschel-related homeobox transcription factor, is required for tiller growth in rice.
    PLoS Genet., 2014. 10(3): p. e1004154
    [PMID:24625559]
  2. Zhu T,Moschou PN,Alvarez JM,Sohlberg JJ,von Arnold S
    Wuschel-related homeobox 8/9 is important for proper embryo patterning in the gymnosperm Norway spruce.
    J. Exp. Bot., 2014. 65(22): p. 6543-52
    [PMID:25205582]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]
  4. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]
  5. Blein T,Pautot V,Laufs P
    Combinations of Mutations Sufficient to Alter Arabidopsis Leaf Dissection.
    Plants (Basel), 2013. 2(2): p. 230-47
    [PMID:27137374]