PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00949.1_g00010.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 580aa    MW: 64234.1 Da    PI: 6.8993
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00949.1_g00010.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-12422467454
                              HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                              +h e+Er+RR+++N++f  Lr+++P+ +      K++Ka+ L  Av YI++L
  Rsa1.0_00949.1_g00010.1 422 NHVEAERQRREKLNQRFYALRSVVPNiS------KMDKASLLGDAVSYINEL 467
                              799***********************66......***************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.8E-5049239IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.136418467IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-18421486IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.19E-14421472No hitNo description
Gene3DG3DSA:4.10.280.101.5E-17422481IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-10422467IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-16424473IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MSSNNNRVWN EDDKAIVASL LGKKALDYLL SNSVPNANLL MTVGSDDNLQ NKLSDLVETP  60
NSSNFSWNYA IFWQVSRSKS GDLVLCWGDG SCREPKDGEK SEMMRMLSMG REEETHQTLR  120
KRVLQKLHAL FGGLDDEEDN CALVLDRVTD TEMFLLASMY FSFPRGQGGP GKCFHSSHPV  180
WLSDLVNSGS DYCVRSFLAK SAGIQTVVLV PTDIGVVELG STSCLPHSDD SISSIRSSFS  240
SPPPPPPPVR VVLPVVVADD NSSSKIFGKD LHTSPAFLHH HHQQQQHNRQ FREKLTVRKM  300
DDRVPKRLDG NRFMFSNPST TPTWIPPPRT NNNSVTAEAP SREDFKFLPL QQSSSSSHRL  360
LPPAQMQIDF SGASSRASET HSDGGGGADW ADLVGGADES GGDNRPRKRG RRPANGRVEA  420
LNHVEAERQR REKLNQRFYA LRSVVPNISK MDKASLLGDA VSYINELYAK LKVMEAERER  480
LGYSSNPHLC LEQPVINVQT AGEDVAVTVS CPLDSHPASR IFHAFEEAKV EVINSKLEVP  540
QDLVLHTFVI KSEEVTKEKL ISALSREQSS SVQSRTSSGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-25416481265Transcription factor MYC2
5gnj_B3e-25416481265Transcription factor MYC2
5gnj_E3e-25416481265Transcription factor MYC2
5gnj_F3e-25416481265Transcription factor MYC2
5gnj_G3e-25416481265Transcription factor MYC2
5gnj_I3e-25416481265Transcription factor MYC2
5gnj_M3e-25416481265Transcription factor MYC2
5gnj_N3e-25416481265Transcription factor MYC2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00949.1_g00010.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018441162.10.0PREDICTED: transcription factor bHLH13
SwissprotQ9LNJ50.0BH013_ARATH; Transcription factor bHLH13
TrEMBLA0A397XPQ50.0A0A397XPQ5_BRACM; Uncharacterized protein
STRINGBra033273.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37582759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.30.0bHLH family protein
Publications ? help Back to Top
  1. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  2. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]